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    Pou2af1 POU domain, class 2, associating factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 18985, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pou2af1provided by MGI
    Official Full Name
    POU domain, class 2, associating factor 1provided by MGI
    Primary source
    MGI:MGI:105086
    See related
    Ensembl:ENSMUSG00000032053
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OC; Bob; OCA; BOB.; Bob-; Bob1; OBF-; OBF.; OCAB; BOB.1; Bob-1; OBF-1; OBF.1; OCA-B
    Expression
    Biased expression in spleen adult (RPKM 91.2), mammary gland adult (RPKM 18.2) and 6 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pou2af1 in Genome Data Viewer
    Location:
    9; 9 A5.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (51124990..51151379)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (51213690..51240079)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (51021795..51048184)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene HOATZ cilia and flagella associated protein Neighboring gene microRNA 34b Neighboring gene BTG anti-proliferation factor 4 Neighboring gene predicted gene, 32742 Neighboring gene RIKEN cDNA 1810046K07 gene Neighboring gene predicted gene, 32819 Neighboring gene COLCA2 homolog Neighboring gene predicted gene, 39338

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of RNA polymerase II transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    POU domain class 2-associating factor 1
    Names
    B-cell-specific coactivator OBF-1
    OCT-binding factor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011136.2NP_035266.1  POU domain class 2-associating factor 1

      See identical proteins and their annotated locations for NP_035266.1

      Status: PROVISIONAL

      Source sequence(s)
      AC160052
      Consensus CDS
      CCDS23176.1
      UniProtKB/Swiss-Prot
      Q64693
      UniProtKB/TrEMBL
      Q542H4
      Related
      ENSMUSP00000034554.8, ENSMUST00000034554.9
      Conserved Domains (1) summary
      pfam09310
      Location:7255
      PD-C2-AF1; POU domain, class 2, associating factor 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      51124990..51151379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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