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    D17H6S56E-5 DNA segment, Chr 17, human D6S56E 5 [ Mus musculus (house mouse) ]

    Gene ID: 110956, updated on 8-Feb-2024

    Summary

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    Official Symbol
    D17H6S56E-5provided by MGI
    Official Full Name
    DNA segment, Chr 17, human D6S56E 5provided by MGI
    Primary source
    MGI:MGI:1306799
    See related
    Ensembl:ENSMUSG00000120992 AllianceGenome:MGI:1306799
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G7e
    Summary
    Is expressed in genitourinary system; hemolymphoid system; and lung. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in liver E14 (RPKM 34.6), liver E14.5 (RPKM 30.5) and 20 other tissues See more
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    Genomic context

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    Location:
    17 B1; 17 18.54 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35215654..35219722, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34996678..35000774, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 1-like Neighboring gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene STARR-positive B cell enhancer ABC_E1941 Neighboring gene STARR-positive B cell enhancer ABC_E7526 Neighboring gene valyl-tRNA synthetase 1 Neighboring gene von Willebrand factor A domain containing 7 Neighboring gene suppressor APC domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A novel locus affecting serum levels of IgG2a maps to the murine H2 region. Matthews VB, et al. Eur J Immunogenet, 2000 Jun. PMID 10940081
    2. The sequence and organization of the mouse valyl-tRNA synthetase gene G7a/Bat6 located in the MHC class III region. Snoek M, et al. Immunogenetics, 1999 May. PMID 10199925
    3. A gene belonging to the Sm family of snRNP core proteins maps within the mouse MHC. Bedian V, et al. Immunogenetics, 1997. PMID 9271633
    4. A novel gene, G7e, resembling a viral envelope gene, is located at the recombinational hot spot in the class III region of the mouse MHC. Snoek M, et al. Genomics, 1996 Nov 15. PMID 8954773
    5. Coding sequences and levels of expression of Hsc70t are identical in mice with different Orch-1 alleles. Snoek M, et al. Immunogenetics, 1994. PMID 8026864

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    MLV-related proviral Env polyprotein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033075.3 → NP_149066.2  MLV-related proviral Env polyprotein-like

      See identical proteins and their annotated locations for NP_149066.2

      Status: VALIDATED

      Source sequence(s)
      AC087117, AK075966
      UniProtKB/TrEMBL
      P97406, Q8R067, Q91UZ6
      Related
      ENSMUST00000247011.1
      Conserved Domains (2) summary
      cd09851
      Location:460 → 537
      HTLV-1-like_HR1-HR2; heptad repeat 1-heptad repeat 2 region (ectodomain) of the transmembrane subunit of human T-cell leukemia virus type 1 (HTLV-1), and related domains
      pfam00429
      Location:38 → 573
      TLV_coat; ENV polyprotein (coat polyprotein)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      35215654..35219722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317209.3 → XP_017172698.1  MLV-related proviral Env polyprotein-like isoform X1

      UniProtKB/TrEMBL
      P97406, Q8R067
      Related
      ENSMUST00000247403.1
      Conserved Domains (1) summary
      pfam00429
      Location:26 → 561
      TLV_coat; ENV polyprotein (coat polyprotein)
    Nucleotide Protein Strain
    Heading Accession and Version

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