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    Krt80 keratin 80 [ Mus musculus (house mouse) ]

    Gene ID: 74127, updated on 23-Jun-2021

    Summary

    Official Symbol
    Krt80provided by MGI
    Official Full Name
    keratin 80provided by MGI
    Primary source
    MGI:MGI:1921377
    See related
    Ensembl:ENSMUSG00000037185
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    K80; Kb20; CK-80; 1200016G03Rik; 2310041I20Rik
    Expression
    Biased expression in lung adult (RPKM 47.4), stomach adult (RPKM 18.2) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Krt80 in Genome Data Viewer
    Location:
    15 F1; 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101246196..101268043, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101348315..101370162, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101180002..101200556, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 41 Neighboring gene predicted gene, 41403 Neighboring gene predicted gene, 52200 Neighboring gene predicted gene, 35853 Neighboring gene microRNA 1941 Neighboring gene predicted gene 671 Neighboring gene keratin 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intermediate filament ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intermediate filament cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    keratin, type II cytoskeletal 80
    Names
    cytokeratin-80
    type-II keratin Kb20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028770.3NP_083046.2  keratin, type II cytoskeletal 80

      See identical proteins and their annotated locations for NP_083046.2

      Status: VALIDATED

      Source sequence(s)
      AC163018, AK004811, BB843716, BC120601
      Consensus CDS
      CCDS37216.1
      UniProtKB/Swiss-Prot
      Q0VBK2
      Related
      ENSMUSP00000076437.5, ENSMUST00000077196.6
      Conserved Domains (2) summary
      pfam00038
      Location:82393
      Filament; Intermediate filament protein
      pfam16208
      Location:978
      Keratin_2_head; Keratin type II head

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      101246196..101268043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521487.4XP_006521550.1  keratin, type II cytoskeletal 80 isoform X1

      Conserved Domains (1) summary
      pfam00038
      Location:1178
      Filament; Intermediate filament protein
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