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    Zfp354b zinc finger protein 354B [ Mus musculus (house mouse) ]

    Gene ID: 27274, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp354bprovided by MGI
    Official Full Name
    zinc finger protein 354Bprovided by MGI
    Primary source
    MGI:MGI:1351476
    See related
    Ensembl:ENSMUSG00000020335
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kid; Kid2; Tcf17l1; Znf354b
    Expression
    Broad expression in CNS E18 (RPKM 1.8), CNS E14 (RPKM 1.3) and 20 other tissues See more
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    Genomic context

    See Zfp354b in Genome Data Viewer
    Location:
    11; 11 B1.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50812613..50822486, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50921786..50931661, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50735288..50745137, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 454 Neighboring gene zinc finger protein 2 Neighboring gene RIKEN cDNA 4933414I15 gene Neighboring gene paired like homeodomain factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Clone Names

    • MGC130408, MGC130409

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 354B
    Names
    kidney, ischemia, and developmentally-regulated protein 2
    transcription factor 17-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013744.3NP_038772.1  zinc finger protein 354B

      See identical proteins and their annotated locations for NP_038772.1

      Status: VALIDATED

      Source sequence(s)
      AK148756, BC107400
      Consensus CDS
      CCDS24641.1
      UniProtKB/Swiss-Prot
      Q9QXT9
      Related
      ENSMUSP00000104752.4, ENSMUST00000109124.10
      Conserved Domains (6) summary
      smart00349
      Location:1473
      KRAB; krueppel associated box
      COG5048
      Location:182585
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:485505
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:290312
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:1453
      KRAB; KRAB box
      pfam13465
      Location:357382
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      50812613..50822486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246044.2XP_030101904.1  zinc finger protein 354B isoform X1

      Conserved Domains (1) summary
      smart00349
      Location:1473
      KRAB; krueppel associated box
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