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    1700123K08Rik RIKEN cDNA 1700123K08 gene [ Mus musculus (house mouse) ]

    Gene ID: 76658, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1700123K08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700123K08 geneprovided by MGI
    Primary source
    MGI:MGI:1923908
    See related
    Ensembl:ENSMUSG00000029526 AllianceGenome:MGI:1923908
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in testis. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 4.2) See more
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    Genomic context

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    Location:
    5 G2; 5 77.1 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (138560066..138562991, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (138561823..138564719, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene mortality factor 4 like 1 pseudogene Neighboring gene vomeronasal 2, receptor, pseudogene 24 Neighboring gene zinc finger protein 68 Neighboring gene STARR-seq mESC enhancer starr_14669 Neighboring gene RIKEN cDNA A430033K04 gene Neighboring gene STARR-positive B cell enhancer ABC_E1314

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. Stauber M, et al. Dev Biol, 2017 Mar 15. PMID 27914912
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC76658

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029693.2 → NP_083969.1  uncharacterized protein LOC76658

      See identical proteins and their annotated locations for NP_083969.1

      Status: PREDICTED

      Source sequence(s)
      AK007254
      Consensus CDS
      CCDS51680.1
      UniProtKB/TrEMBL
      Q9D991
      Related
      ENSMUSP00000031501.2, ENSMUST00000031501.2
      Conserved Domains (1) summary
      cd06224
      Location:89 → 176
      REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      138560066..138562991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240960.3 → XP_011239262.1  uncharacterized protein LOC76658 isoform X3

      Conserved Domains (1) summary
      cd06224
      Location:89 → 176
      REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...

    2. XM_017321155.3 → XP_017176644.1  uncharacterized protein LOC76658 isoform X1

      Related
      ENSMUST00000199968.5
      Conserved Domains (1) summary
      cd06224
      Location:89 → 176
      REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...

    3. XM_011240959.4 → XP_011239261.1  uncharacterized protein LOC76658 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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