U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pdzph1 PDZ and pleckstrin homology domains 1 [ Mus musculus (house mouse) ]

    Gene ID: 69239, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Pdzph1provided by MGI
    Official Full Name
    PDZ and pleckstrin homology domains 1provided by MGI
    Primary source
    MGI:MGI:1916489
    See related
    Ensembl:ENSMUSG00000024227 AllianceGenome:MGI:1916489
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610034M16Rik
    Summary
    Orthologous to human PDZPH1P (PDZ and pleckstrin homology domains 1, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 2.3), CNS E11.5 (RPKM 0.8) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    17 D; 17 30.57 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (59185803..59298344, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (58878808..58991375, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene glucocorticoid induced transcript 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_42930 Neighboring gene STARR-seq mESC enhancer starr_42931 Neighboring gene STARR-seq mESC enhancer starr_42932 Neighboring gene general transcription factor III A pseudogene Neighboring gene STARR-seq mESC enhancer starr_42933 Neighboring gene predicted gene, 33751 Neighboring gene STARR-seq mESC enhancer starr_42935 Neighboring gene nudix hydrolase 12, opposite strand Neighboring gene nudix hydrolase 12 Neighboring gene STARR-seq mESC enhancer starr_42936 Neighboring gene nuclear encoded tRNA valine 3 (anticodon CAC)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    PDZ and pleckstrin homology domains 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027001.2 → NP_081277.2  PDZ and pleckstrin homology domains 1

      Status: VALIDATED

      Source sequence(s)
      CT009564
      Consensus CDS
      CCDS37673.1
      UniProtKB/TrEMBL
      F6UGR1
      Related
      ENSMUSP00000025064.9, ENSMUST00000025064.14

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      59185803..59298344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous