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    Tmtc4 transmembrane and tetratricopeptide repeat containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 70551, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmtc4provided by MGI
    Official Full Name
    transmembrane and tetratricopeptide repeat containing 4provided by MGI
    Primary source
    MGI:MGI:1921050
    See related
    Ensembl:ENSMUSG00000041594
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930403J22Rik; 5730419O14Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 6.0), CNS E11.5 (RPKM 5.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tmtc4 in Genome Data Viewer
    Location:
    14; 14 E5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (123156383..123220697, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (122918971..122983285, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (123318197..123382483, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene propionyl-Coenzyme A carboxylase, alpha polypeptide Neighboring gene uncharacterized LOC118568129 Neighboring gene RIKEN cDNA 4930594M22 gene Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene predicted gene, 46488 Neighboring gene U7 small nuclear RNA Neighboring gene expressed sequence AA536875

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    protein O-mannosyl-transferase TMTC4
    Names
    transmembrane and TPR repeat-containing protein 4
    NP_001347527.1
    NP_001347528.1
    NP_082927.1
    XP_006519573.1
    XP_006519574.1
    XP_017171671.1
    XP_017171672.1
    XP_017171674.1
    XP_030103863.1
    XP_030103864.1
    XP_030103865.1
    XP_030103866.1
    XP_030103867.1
    XP_030103868.1
    XP_030103869.1
    XP_030103870.1
    XP_030103872.1
    XP_036014738.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360598.1NP_001347527.1  protein O-mannosyl-transferase TMTC4

      Status: VALIDATED

      Source sequence(s)
      AK033947, AK049748, BX512100, BY125796
      Consensus CDS
      CCDS27352.1
      Conserved Domains (3) summary
      COG0457
      Location:481717
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:482510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292366
      DUF1736; Domain of unknown function (DUF1736)
    2. NM_001360599.1NP_001347528.1  protein O-mannosyl-transferase TMTC4

      Status: VALIDATED

      Source sequence(s)
      AK033947, AK043293, BB852647, BX512100
      Consensus CDS
      CCDS27352.1
      Related
      ENSMUSP00000121523.2, ENSMUST00000148661.2
      Conserved Domains (3) summary
      COG0457
      Location:481717
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:482510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292366
      DUF1736; Domain of unknown function (DUF1736)
    3. NM_028651.3NP_082927.1  protein O-mannosyl-transferase TMTC4

      See identical proteins and their annotated locations for NP_082927.1

      Status: VALIDATED

      Source sequence(s)
      AK033947, BX512100, BY125796
      Consensus CDS
      CCDS27352.1
      UniProtKB/Swiss-Prot
      Q8BG19
      Related
      ENSMUSP00000046368.8, ENSMUST00000037726.14
      Conserved Domains (3) summary
      COG0457
      Location:481717
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:482510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292366
      DUF1736; Domain of unknown function (DUF1736)

    RNA

    1. NR_153663.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK036741, BX512100, BY125796
      Related
      ENSMUST00000143189.8

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      123156383..123220697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030248003.2XP_030103863.1  protein O-mannosyl-transferase TMTC4 isoform X2

      Conserved Domains (3) summary
      COG0457
      Location:480716
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:481509
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:291365
      DUF1736; Domain of unknown function (DUF1736)
    2. XM_030248004.2XP_030103864.1  protein O-mannosyl-transferase TMTC4 isoform X4

      Conserved Domains (3) summary
      COG0457
      Location:360596
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:361389
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:171245
      DUF1736; Domain of unknown function (DUF1736)
    3. XM_017316183.1XP_017171672.1  protein O-mannosyl-transferase TMTC4 isoform X3

      UniProtKB/Swiss-Prot
      Q8BG19
      Conserved Domains (3) summary
      COG0457
      Location:361597
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:362390
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:172246
      DUF1736; Domain of unknown function (DUF1736)
    4. XM_036158845.1XP_036014738.1  protein O-mannosyl-transferase TMTC4 isoform X6

      Conserved Domains (3) summary
      TIGR02917
      Location:181455
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:220248
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:32104
      DUF1736; Domain of unknown function (DUF1736)
    5. XM_030248009.2XP_030103869.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    6. XM_006519511.5XP_006519574.1  protein O-mannosyl-transferase TMTC4 isoform X2

      Conserved Domains (3) summary
      COG0457
      Location:480716
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:481509
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:291365
      DUF1736; Domain of unknown function (DUF1736)
    7. XM_030248005.2XP_030103865.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    8. XM_017316185.3XP_017171674.1  protein O-mannosyl-transferase TMTC4 isoform X6

      Conserved Domains (3) summary
      TIGR02917
      Location:181455
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:220248
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:32104
      DUF1736; Domain of unknown function (DUF1736)
    9. XM_030248012.2XP_030103872.1  protein O-mannosyl-transferase TMTC4 isoform X6

      Conserved Domains (3) summary
      TIGR02917
      Location:181455
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:220248
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:32104
      DUF1736; Domain of unknown function (DUF1736)
    10. XM_030248010.2XP_030103870.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    11. XM_030248006.2XP_030103866.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    12. XM_030248007.2XP_030103867.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    13. XM_017316182.3XP_017171671.1  protein O-mannosyl-transferase TMTC4 isoform X2

      Conserved Domains (3) summary
      COG0457
      Location:480716
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:481509
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:291365
      DUF1736; Domain of unknown function (DUF1736)
    14. XM_030248008.2XP_030103868.1  protein O-mannosyl-transferase TMTC4 isoform X5

      Conserved Domains (3) summary
      TIGR02917
      Location:226500
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:265293
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:75149
      DUF1736; Domain of unknown function (DUF1736)
    15. XM_006519510.3XP_006519573.1  protein O-mannosyl-transferase TMTC4 isoform X1

      See identical proteins and their annotated locations for XP_006519573.1

      UniProtKB/Swiss-Prot
      Q8BG19
      Related
      ENSMUSP00000116379.2, ENSMUST00000126867.8
      Conserved Domains (3) summary
      COG0457
      Location:481717
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:482510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292366
      DUF1736; Domain of unknown function (DUF1736)
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