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    Ccdc192 coiled-coil domain containing 192 [ Mus musculus (house mouse) ]

    Gene ID: 75444, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Ccdc192provided by MGI
    Official Full Name
    coiled-coil domain containing 192provided by MGI
    Primary source
    MGI:MGI:1922694
    See related
    Ensembl:ENSMUSG00000058925 AllianceGenome:MGI:1922694
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700011I03Rik; 4930583I06Rik
    Summary
    Orthologous to human CCDC192 (coiled-coil domain containing 192). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 19.4) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    18 D3; 18 32.15 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (57666814..57864139)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (57533742..57731067)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34982 Neighboring gene RIKEN cDNA 1700066O22 gene Neighboring gene cortexin 3 Neighboring gene RIKEN cDNA 4930511M06 gene Neighboring gene ribonuclease/angiogenin inhibitor 1 pseudogene Neighboring gene RIKEN cDNA 2210409D07 gene Neighboring gene STARR-positive B cell enhancer ABC_E3229 Neighboring gene STARR-seq mESC enhancer starr_44690 Neighboring gene STARR-seq mESC enhancer starr_44691 Neighboring gene predicted gene, 26038 Neighboring gene STARR-seq mESC enhancer starr_44692 Neighboring gene predicted gene, 19519 Neighboring gene predicted gene, 35751

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 192

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311063.2 → NP_001297992.2  coiled-coil domain-containing protein 192 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 3' coding region, which results in a frameshift compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC102232, AC152398
      Consensus CDS
      CCDS79645.1
      UniProtKB/TrEMBL
      D3YYW6
      Related
      ENSMUSP00000115752.3, ENSMUST00000135806.8

    2. NM_001406366.1 → NP_001393295.1  coiled-coil domain-containing protein 192 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC102232, AC152398

    3. NM_029290.2 → NP_083566.2  coiled-coil domain-containing protein 192 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC102232, AC152398
      Consensus CDS
      CCDS50295.1
      UniProtKB/TrEMBL
      E9PYL8
      Related
      ENSMUSP00000078674.5, ENSMUST00000079738.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      57666814..57864139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017318003.2 → XP_017173492.1  coiled-coil domain-containing protein 192 isoform X1

      UniProtKB/TrEMBL
      Q9DAG0

    2. XM_030250625.1 → XP_030106485.1  coiled-coil domain-containing protein 192 isoform X3

    3. XM_030250624.1 → XP_030106484.1  coiled-coil domain-containing protein 192 isoform X2

    4. XM_030250626.1 → XP_030106486.1  coiled-coil domain-containing protein 192 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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