U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ly6g6g lymphocyte antigen 6 family member G6G [ Mus musculus (house mouse) ]

    Gene ID: 78725, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ly6g6gprovided by MGI
    Official Full Name
    lymphocyte antigen 6 family member G6Gprovided by MGI
    Primary source
    MGI:MGI:1925975
    See related
    Ensembl:ENSMUSG00000101026 AllianceGenome:MGI:1925975
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable acetylcholine receptor inhibitor activity. Predicted to be active in plasma membrane. Predicted to be anchored component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in bladder adult (RPKM 2.1), kidney adult (RPKM 1.6) and 7 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    15 D3; 15 34.27 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74642757..74656694, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74770908..74778859, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene Ly6/neurotoxin 1 Neighboring gene lymphocyte antigen 6 family member D Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:74599639-74599822 Neighboring gene STARR-seq mESC enhancer starr_38995 Neighboring gene predicted gene, 33174 Neighboring gene lymphocyte antigen 6 family member K

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Organization, evolution and functions of the human and mouse Ly6/uPAR family genes. Loughner CL, et al. Hum Genomics, 2016 Apr 21. PMID 27098205, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • D730001G18Rik

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    lymphocyte antigen 6 complex, locus G6G

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001384153.1 → NP_001371082.1  lymphocyte antigen 6 complex, locus G6G isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AC139671
      UniProtKB/TrEMBL
      A0A087WQU7
      Related
      ENSMUSP00000140350.2, ENSMUST00000186014.2
      Conserved Domains (1) summary
      cd00117
      Location:21 → 91
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    2. NM_001384154.1 → NP_001371083.1  lymphocyte antigen 6 complex, locus G6G isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC139671
      UniProtKB/TrEMBL
      A0A087WRX0
      Related
      ENSMUSP00000140804.2, ENSMUST00000191407.2
      Conserved Domains (1) summary
      cl10471
      Location:24 → 58
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      74642757..74656694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159637.1 → XP_036015530.1  lymphocyte antigen 6 complex, locus G6G isoform X2

      Conserved Domains (1) summary
      cl10471
      Location:14 → 48
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    2. XM_036159636.1 → XP_036015529.1  lymphocyte antigen 6 complex, locus G6G isoform X1

      UniProtKB/TrEMBL
      A0A087WQU7
      Conserved Domains (1) summary
      cd00117
      Location:11 → 81
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_172433.2: Suppressed sequence

      Description
      NM_172433.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.