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    Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta [ Mus musculus (house mouse) ]

    Gene ID: 243910, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nfkbidprovided by MGI
    Official Full Name
    nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, deltaprovided by MGI
    Primary source
    MGI:MGI:3041243
    See related
    Ensembl:ENSMUSG00000036931
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ik; IkappaBNS; ikB-delta; I-kappa-B-delta
    Expression
    Biased expression in spleen adult (RPKM 15.9), thymus adult (RPKM 12.6) and 13 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Nfkbid in Genome Data Viewer
    Location:
    7; 7 B1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30121156..30128173)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30421731..30428749)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31208323..31213765)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene TYRO protein tyrosine kinase binding protein Neighboring gene hematopoietic cell signal transducer Neighboring gene predicted gene, 30646 Neighboring gene amyloid beta (A4) precursor-like protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Clone Names

    • MGC130396

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360906.1NP_001347835.1  NF-kappa-B inhibitor delta

      Status: VALIDATED

      Source sequence(s)
      AC149067
      Consensus CDS
      CCDS21091.1
      Conserved Domains (3) summary
      PHA03095
      Location:60301
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:6296
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:200292
      Ank_2; Ankyrin repeats (3 copies)
    2. NM_001360907.1NP_001347836.1  NF-kappa-B inhibitor delta

      Status: VALIDATED

      Source sequence(s)
      AC149067, AK167356
      Consensus CDS
      CCDS21091.1
      Related
      ENSMUSP00000103810.2, ENSMUST00000108175.8
      Conserved Domains (3) summary
      PHA03095
      Location:60301
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:6296
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:200292
      Ank_2; Ankyrin repeats (3 copies)
    3. NM_172142.4NP_742154.1  NF-kappa-B inhibitor delta

      See identical proteins and their annotated locations for NP_742154.1

      Status: VALIDATED

      Source sequence(s)
      AC149067, AY078069
      Consensus CDS
      CCDS21091.1
      UniProtKB/Swiss-Prot
      Q2TB02
      Related
      ENSMUSP00000042317.9, ENSMUST00000046177.9
      Conserved Domains (3) summary
      PHA03095
      Location:60301
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:6296
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:200292
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      30121156..30128173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242570.2XP_030098430.1  NF-kappa-B inhibitor delta isoform X1

      Conserved Domains (3) summary
      PHA03095
      Location:60301
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:6296
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:200292
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. XR_004934098.1 RNA Sequence

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