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    AB124611 cDNA sequence AB124611 [ Mus musculus (house mouse) ]

    Gene ID: 382062, updated on 30-Apr-2024

    Summary

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    Official Symbol
    AB124611provided by MGI
    Official Full Name
    cDNA sequence AB124611provided by MGI
    Primary source
    MGI:MGI:3043001
    See related
    Ensembl:ENSMUSG00000057191 AllianceGenome:MGI:3043001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1706
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gut; lung; and male reproductive gland or organ. Orthologous to human C19orf38 (chromosome 19 open reading frame 38). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in spleen adult (RPKM 26.7), mammary gland adult (RPKM 7.9) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    9 A3; 9 7.82 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (21437410..21456629)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21526114..21545333)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dynamin 2 Neighboring gene predicted gene, 57796 Neighboring gene microRNA 199a-1 Neighboring gene STARR-positive B cell enhancer ABC_E8279 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E11402 Neighboring gene STARR-positive B cell enhancer mm9_chr9:21350851-21351152 Neighboring gene STARR-seq mESC enhancer starr_23505 Neighboring gene coactivator-associated arginine methyltransferase 1 Neighboring gene predicted gene, 39303 Neighboring gene Yip1 domain family, member 2 Neighboring gene translocase of inner mitochondrial membrane 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The genetic program of hematopoietic stem cells. Phillips RL, et al. Science, 2000 Jun 2. PMID 10834841
    2. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
    3. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    4. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    5. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 
    • Gene trapped (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein HIDE1
    Names
    HIDE1
    highly expressed in immature dendritic cell transcript 1 protein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198794.2 → NP_001185723.2  protein HIDE1 isoform 1 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      AC163748
      Consensus CDS
      CCDS57661.1
      UniProtKB/Swiss-Prot
      Q75VT7, Q75VT8
      UniProtKB/TrEMBL
      A0A0B4J1G2
      Related
      ENSMUSP00000083547.7, ENSMUST00000086361.13
      Conserved Domains (1) summary
      pfam17737
      Location:22 → 116
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    2. NM_206536.3 → NP_996259.3  protein HIDE1 isoform 2 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1, and encodes a shorter protein (isoform 2) compared to isoform 1.
      Source sequence(s)
      AC163748
      Consensus CDS
      CCDS22905.2
      UniProtKB/TrEMBL
      Z4YNA9
      Related
      ENSMUSP00000134056.4, ENSMUST00000173769.4
      Conserved Domains (1) summary
      pfam17737
      Location:22 → 116
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      21437410..21456629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242566.3 → XP_011240868.1  protein HIDE1 isoform X5

      UniProtKB/TrEMBL
      A0A0B4J1G2
      Conserved Domains (1) summary
      pfam17737
      Location:26 → 120
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    2. XM_036155092.1 → XP_036010985.1  protein HIDE1 isoform X1

      Conserved Domains (1) summary
      pfam17737
      Location:26 → 120
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    3. XM_036155093.1 → XP_036010986.1  protein HIDE1 isoform X3

      Conserved Domains (1) summary
      pfam17737
      Location:26 → 120
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    4. XM_011242567.4 → XP_011240869.1  protein HIDE1 isoform X2

      Conserved Domains (1) summary
      pfam17737
      Location:26 → 120
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

    5. XM_030244431.2 → XP_030100291.1  protein HIDE1 isoform X4

      Conserved Domains (1) summary
      pfam17737
      Location:26 → 120
      Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75VT8.1 GenPept UniProtKB/Swiss-Prot:Q75VT8

    Gene LinkOut

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