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    AI854703 expressed sequence AI854703 [ Mus musculus (house mouse) ]

    Gene ID: 243373, updated on 5-Mar-2024

    Summary

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    Official Symbol
    AI854703provided by MGI
    Official Full Name
    expressed sequence AI854703provided by MGI
    Primary source
    MGI:MGI:2141510
    See related
    Ensembl:ENSMUSG00000053297 AllianceGenome:MGI:2141510
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI182503; D630044C04
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in colon adult (RPKM 26.1), kidney adult (RPKM 13.2) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    6 B2.3; 6 23.61 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48603973..48610625)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48628167..48633688)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene replication initiator 1 Neighboring gene STARR-positive B cell enhancer ABC_E6426 Neighboring gene zinc finger protein 775 Neighboring gene predicted gene, 38804 Neighboring gene STARR-positive B cell enhancer ABC_E9664 Neighboring gene GTPase, IMAP family member 8 Neighboring gene predicted gene, 44262

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein LOC728743 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402005.1 → NP_001388934.1  zinc finger protein LOC728743 homolog

      Status: VALIDATED

      Source sequence(s)
      AC154013
      UniProtKB/TrEMBL
      Q8BIN3
      Related
      ENSMUSP00000145982.2, ENSMUST00000095938.10

    2. NM_001402006.1 → NP_001388935.1  zinc finger protein LOC728743 homolog

      Status: VALIDATED

      Source sequence(s)
      AC154013
      UniProtKB/TrEMBL
      Q8BIN3

    3. NM_001402007.1 → NP_001388936.1  zinc finger protein LOC728743 homolog

      Status: VALIDATED

      Source sequence(s)
      AC154013
      UniProtKB/TrEMBL
      Q8BIN3

    4. NM_001402008.1 → NP_001388937.1  zinc finger protein LOC728743 homolog

      Status: VALIDATED

      Source sequence(s)
      AC154013
      UniProtKB/TrEMBL
      Q8BIN3
      Related
      ENSMUSP00000145812.2, ENSMUST00000154570.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      48603973..48610625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177737.2: Suppressed sequence

      Description
      NM_177737.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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