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    Zfp879 zinc finger protein 879 [ Mus musculus (house mouse) ]

    Gene ID: 214779, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp879provided by MGI
    Official Full Name
    zinc finger protein 879provided by MGI
    Primary source
    MGI:MGI:3053099
    See related
    Ensembl:ENSMUSG00000044296
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Znf879
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Zfp879 in Genome Data Viewer
    Location:
    11; 11 B1.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50719821..50732414, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50828994..50841587, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50645537..50655054, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 Neighboring gene predicted gene, 51860 Neighboring gene zinc finger protein 354C Neighboring gene glutamate receptor, metabotropic 6 Neighboring gene zinc finger protein 454

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Homology

    Clone Names

    • 9630041N07Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 879
    Names
    novel zinc finger protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290779.1NP_001277708.1  zinc finger protein 879 isoform 2

      See identical proteins and their annotated locations for NP_001277708.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in its 5' UTR, lacks part of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK036152, BC118537, BF457823
      Consensus CDS
      CCDS70178.1
      UniProtKB/Swiss-Prot
      Q8BI99
      UniProtKB/TrEMBL
      Q147Z4
      Related
      ENSMUSP00000104761.2, ENSMUST00000109133.2
      Conserved Domains (3) summary
      COG5048
      Location:132485
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:453478
      zf-H2C2_2; Zinc-finger double domain
    2. NM_173387.3NP_775563.1  zinc finger protein 879 isoform 1

      See identical proteins and their annotated locations for NP_775563.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK036152, BF457823
      Consensus CDS
      CCDS24638.1
      UniProtKB/Swiss-Prot
      Q8BI99
      Related
      ENSMUSP00000061782.2, ENSMUST00000049625.2
      Conserved Domains (6) summary
      smart00349
      Location:1470
      KRAB; krueppel associated box
      COG5048
      Location:205558
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:374394
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:204226
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:1453
      KRAB; KRAB box
      pfam13465
      Location:526551
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      50719821..50732414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030245779.1XP_030101639.1  zinc finger protein 879 isoform X1

      Conserved Domains (3) summary
      smart00349
      Location:1470
      KRAB; krueppel associated box
      COG5048
      Location:201554
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:370390
      ZF_C2H2; C2H2 Zn finger [structural motif]
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