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    Fer1l6 fer-1-like 6 (C. elegans) [ Mus musculus (house mouse) ]

    Gene ID: 631797, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fer1l6provided by MGI
    Official Full Name
    fer-1-like 6 (C. elegans)provided by MGI
    Primary source
    MGI:MGI:3645398
    See related
    Ensembl:ENSMUSG00000037106
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG631797
    Expression
    Biased expression in colon adult (RPKM 6.1), large intestine adult (RPKM 2.6) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fer1l6 in Genome Data Viewer
    Location:
    15; 15 D1
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (58381897..58536936)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58510048..58665087)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (58341609..58494449)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53238 Neighboring gene annexin A13 Neighboring gene family with sequence similarity 91, member A1 Neighboring gene predicted gene, 36451 Neighboring gene predicted gene, 41329 Neighboring gene transmembrane protein 65 Neighboring gene predicted gene, 24041

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in plasma membrane organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370912.1NP_001357841.1  fer-1-like protein 6

      Status: VALIDATED

      Source sequence(s)
      AC107742, AC107775, AC163393
      Related
      ENSMUSP00000125718.2, ENSMUST00000161028.2
      Conserved Domains (8) summary
      cd04011
      Location:89198
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:838971
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:253404
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:13721495
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08374
      Location:16121745
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
      pfam08150
      Location:725796
      FerB; FerB (NUC096) domain
      pfam08151
      Location:196245
      FerI; FerI (NUC094) domain
      pfam16165
      Location:17561868
      Ferlin_C; Ferlin C-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      58381897..58536936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521609.3XP_006521672.2  fer-1-like protein 6 isoform X1

      See identical proteins and their annotated locations for XP_006521672.2

      Conserved Domains (8) summary
      cd04011
      Location:79188
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:828961
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:243394
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:13621485
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08374
      Location:16021735
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
      pfam08150
      Location:715786
      FerB; FerB (NUC096) domain
      pfam08151
      Location:186235
      FerI; FerI (NUC094) domain
      pfam16165
      Location:17461858
      Ferlin_C; Ferlin C-terminus
    2. XM_006521610.5XP_006521673.1  fer-1-like protein 6 isoform X2

      See identical proteins and their annotated locations for XP_006521673.1

      Conserved Domains (4) summary
      cd04037
      Location:485608
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08374
      Location:725858
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
      pfam16165
      Location:869981
      Ferlin_C; Ferlin C-terminus
      cl14603
      Location:184
      C2; C2 domain
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