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    1700017B05Rik RIKEN cDNA 1700017B05 gene [ Mus musculus (house mouse) ]

    Gene ID: 74211, updated on 5-Mar-2024

    Summary

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    Official Symbol
    1700017B05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700017B05 geneprovided by MGI
    Primary source
    MGI:MGI:1921461
    See related
    Ensembl:ENSMUSG00000032300 AllianceGenome:MGI:1921461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D9Ertd278e
    Summary
    Predicted to be located in cytosol. Orthologous to human C15orf39 (chromosome 15 open reading frame 39). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis adult (RPKM 19.1), ovary adult (RPKM 12.0) and 22 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    9 B; 9 30.89 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (57159605..57169882, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (57252322..57262599, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24220 Neighboring gene STARR-positive B cell enhancer ABC_E11407 Neighboring gene predicted gene, 46115 Neighboring gene taste receptor cell gene 1 Neighboring gene STARR-positive B cell enhancer ABC_E890 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:57126080-57126189 Neighboring gene STARR-seq mESC enhancer starr_24223 Neighboring gene STARR-seq mESC enhancer starr_24225 Neighboring gene STARR-seq mESC enhancer starr_24226 Neighboring gene predicted gene, 39343 Neighboring gene STARR-seq mESC enhancer starr_24227 Neighboring gene NSA2 ribosome biogenesis homolog pseudogene Neighboring gene 40S ribosomal protein S8 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC144191

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C15orf39 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028820.2 → NP_083096.1  uncharacterized protein C15orf39 homolog

      See identical proteins and their annotated locations for NP_083096.1

      Status: VALIDATED

      Source sequence(s)
      AK031730, BC118527, BY706170
      Consensus CDS
      CCDS23219.1
      UniProtKB/Swiss-Prot
      Q148A1, Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93
      UniProtKB/TrEMBL
      B9EKK8
      Related
      ENSMUSP00000034846.6, ENSMUST00000034846.7
      Conserved Domains (1) summary
      pfam17663
      Location:1 → 1023
      DUF5525; Family of unknown function (DUF5525)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      57159605..57169882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511516.4 → XP_006511579.1  uncharacterized protein C15orf39 homolog isoform X1

      See identical proteins and their annotated locations for XP_006511579.1

      UniProtKB/Swiss-Prot
      Q148A1, Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93
      UniProtKB/TrEMBL
      B9EKK8
      Conserved Domains (1) summary
      pfam17663
      Location:1 → 1023
      DUF5525; Family of unknown function (DUF5525)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3TEI4.2 GenPept UniProtKB/Swiss-Prot:Q3TEI4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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