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    Bex1 brain expressed X-linked 1 [ Mus musculus (house mouse) ]

    Gene ID: 19716, updated on 6-May-2021

    Summary

    Official Symbol
    Bex1provided by MGI
    Official Full Name
    brain expressed X-linked 1provided by MGI
    Primary source
    MGI:MGI:1328321
    See related
    Ensembl:ENSMUSG00000050071
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rex; Bex4; Rex3; AA407839; AU018692
    Expression
    Biased expression in placenta adult (RPKM 230.0), liver E14 (RPKM 115.8) and 10 other tissues See more
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    Genomic context

    See Bex1 in Genome Data Viewer
    Location:
    X F1; X 57.4 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135114721..135116262, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136213972..136215513, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (132748511..132750052, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 41901 Neighboring gene nuclear encoded tRNA lysine 19 (anticodon CTT) Neighboring gene transcription elongation factor A (SII)-like 5 Neighboring gene predicted gene, 51612 Neighboring gene transcription elongation factor A (SII)-like 7 Neighboring gene predicted gene, 39535

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC107097

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    protein BEX1
    Names
    REX-3
    brain expressed gene 1
    brain-expressed X-linked protein 1 homolog
    reduced expression 3
    reduced expression protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009052.2NP_033078.2  protein BEX1

      See identical proteins and their annotated locations for NP_033078.2

      Status: VALIDATED

      Source sequence(s)
      AF097438, BY115963, CB194115
      Consensus CDS
      CCDS30417.1
      UniProtKB/Swiss-Prot
      Q9R224
      Related
      ENSMUSP00000060005.9, ENSMUST00000058125.9
      Conserved Domains (1) summary
      pfam04538
      Location:13124
      BEX; Brain expressed X-linked like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      135114721..135116262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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