U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rnu6 U6 small nuclear RNA [ Mus musculus (house mouse) ]

    Gene ID: 19862, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Rnu6provided by MGI
    Official Full Name
    U6 small nuclear RNAprovided by MGI
    Primary source
    MGI:MGI:97989
    See related
    Ensembl:ENSMUSG00000119272 AllianceGenome:MGI:97989
    Gene type
    snRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Located in nuclear speck. Is expressed in cerebral cortex. [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    17 A1; 17 8.88 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (13652295..13652401, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (13432033..13432139, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase-like family, member 2 pseudogene Neighboring gene predicted gene, 25730 Neighboring gene STARR-seq mESC enhancer starr_41874 Neighboring gene RIKEN cDNA 2700054A10 gene Neighboring gene STARR-seq mESC enhancer starr_41875 Neighboring gene predicted gene 8603 Neighboring gene sperm motility kinase 4A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The nucleotide sequence of nuclear 4.8S RNA of mouse cells. Harada F, et al. Biochem Biophys Res Commun, 1980 Aug 14. PMID 6251836
    2. Organization of spliceosomal U6 snRNA genes in the mouse genome. Yuan Y, et al. Mol Biol Rep, 1988-1989. PMID 3255051
    3. Complete sequence of mouse S6 ribosomal protein. Lalanne JL, et al. Nucleic Acids Res, 1987 Jun 25. PMID 3601662, Free PMC Article
    4. Nucleotide sequences of mouse genomic loci including a gene or pseudogene for U6 (4.8S) nuclear RNA. Ohshima Y, et al. Nucleic Acids Res, 1981 Oct 10. PMID 6171774, Free PMC Article
    5. MicroRNA Signatures of the Developing Primate Fovea. Fishman ES, et al. Front Cell Dev Biol, 2021. PMID 33898453, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003027.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166110
      Related
      ENSMUST00000240167.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      13652295..13652401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials