U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Csnka2ip casein kinase 2, alpha prime interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 224291, updated on 16-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Csnka2ipprovided by MGI
    Official Full Name
    casein kinase 2, alpha prime interacting proteinprovided by MGI
    Primary source
    MGI:MGI:2676295
    See related
    Ensembl:ENSMUSG00000068167 AllianceGenome:MGI:2676295
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ckt2
    Summary
    Located in nucleus. Orthologous to human CSNKA2IP (casein kinase 2 subunit alpha' interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 57.9) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    16 C1.3; 16 36.99 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (64298173..64422694, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (64477810..64602331, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene Eph receptor A3 Neighboring gene predicted gene, 22769 Neighboring gene STARR-seq mESC enhancer starr_41140 Neighboring gene predicted gene, 41466 Neighboring gene STARR-seq mESC enhancer starr_41141 Neighboring gene STARR-seq mESC enhancer starr_41142 Neighboring gene STARR-seq mESC enhancer starr_41143 Neighboring gene STARR-seq mESC enhancer starr_41144 Neighboring gene STARR-seq mESC enhancer starr_41145 Neighboring gene STARR-seq mESC enhancer starr_41146 Neighboring gene RIKEN cDNA 4930453N24 gene Neighboring gene STARR-seq mESC enhancer starr_41148 Neighboring gene STARR-positive B cell enhancer mm9_chr16:64851511-64851812 Neighboring gene zinc finger protein 654

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of a novel testis-specific gene CKT2, which encodes a substrate for protein kinase CK2. Bai X, et al. Nucleic Acids Res, 2009 May. PMID 19273531, Free PMC Article
    2. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    casein kinase II subunit alpha'-interacting protein
    Names
    CK2 target protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368721.1 → NP_001355650.1  casein kinase II subunit alpha'-interacting protein

      Status: VALIDATED

      Source sequence(s)
      AC154294, AC166327
      Consensus CDS
      CCDS37374.2
      UniProtKB/Swiss-Prot
      A0A1B0GSC5, Q8CH19

    2. NM_173861.3 → NP_776286.2  casein kinase II subunit alpha'-interacting protein

      Status: VALIDATED

      Source sequence(s)
      AC154294, AC166327
      Consensus CDS
      CCDS37374.2
      UniProtKB/Swiss-Prot
      A0A1B0GSC5, Q8CH19
      Related
      ENSMUSP00000147880.2, ENSMUST00000209382.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      64298173..64422694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011245887.2 → XP_011244189.1  casein kinase II subunit alpha'-interacting protein isoform X1

      See identical proteins and their annotated locations for XP_011244189.1

      UniProtKB/Swiss-Prot
      A0A1B0GSC5, Q8CH19
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CH19.2 GenPept UniProtKB/Swiss-Prot:Q8CH19

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous