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    4930590J08Rik RIKEN cDNA 4930590J08 gene [ Mus musculus (house mouse) ]

    Gene ID: 381798, updated on 5-Mar-2024

    Summary

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    Official Symbol
    4930590J08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930590J08 geneprovided by MGI
    Primary source
    MGI:MGI:2685917
    See related
    Ensembl:ENSMUSG00000034063 AllianceGenome:MGI:2685917
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1071
    Summary
    Predicted to be located in cytoplasm. Orthologous to human C3orf20 (chromosome 3 open reading frame 20). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 24.6) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    6 D1; 6 40.94 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (91877732..91928717)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (91900751..91951736)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16652 Neighboring gene STARR-seq mESC enhancer starr_16656 Neighboring gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6 Neighboring gene STARR-seq mESC enhancer starr_16660 Neighboring gene glutamate receptor interacting protein 2 Neighboring gene coiled-coil domain containing 174 Neighboring gene STARR-positive B cell enhancer ABC_E6456 Neighboring gene predicted gene, 53299 Neighboring gene FYVE, RhoGEF and PH domain containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism. Chen R, et al. FASEB J, 2022 Dec. PMID 36331537
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism.
      Title: Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Endonuclease-mediated (1)  1 citation

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C3orf20 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198668.2 → NP_941070.1  uncharacterized protein C3orf20 homolog

      See identical proteins and their annotated locations for NP_941070.1

      Status: VALIDATED

      Source sequence(s)
      AC168852, AK029822
      Consensus CDS
      CCDS51853.1
      UniProtKB/Swiss-Prot
      Q8CDN1
      Related
      ENSMUSP00000146101.2, ENSMUST00000205686.2
      Conserved Domains (1) summary
      pfam14977
      Location:357 → 559
      FAM194; FAM194 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      91877732..91928717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506332.4 → XP_006506395.1  uncharacterized protein C3orf20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506395.1

      UniProtKB/Swiss-Prot
      Q8CDN1
      Conserved Domains (1) summary
      pfam14977
      Location:357 → 559
      FAM194; FAM194 protein

    2. XM_017321667.2 → XP_017177156.1  uncharacterized protein C3orf20 homolog isoform X4

      Conserved Domains (1) summary
      pfam14977
      Location:357 → 559
      FAM194; FAM194 protein

    3. XM_017321666.2 → XP_017177155.1  uncharacterized protein C3orf20 homolog isoform X3

      Conserved Domains (1) summary
      pfam14977
      Location:335 → 537
      FAM194; FAM194 protein

    4. XM_017321665.2 → XP_017177154.1  uncharacterized protein C3orf20 homolog isoform X2

      Conserved Domains (1) summary
      pfam14977
      Location:356 → 558
      FAM194; FAM194 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CDN1.1 GenPept UniProtKB/Swiss-Prot:Q8CDN1

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