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    Dmrtc1a DMRT-like family C1a [ Mus musculus (house mouse) ]

    Gene ID: 70887, updated on 23-Jun-2021

    Summary

    Official Symbol
    Dmrtc1aprovided by MGI
    Official Full Name
    DMRT-like family C1aprovided by MGI
    Primary source
    MGI:MGI:1918137
    See related
    Ensembl:ENSMUSG00000031323
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DMRTC1; Dmrt8.; Dmrt8.1; 1700030H14Rik; 4921520P21Rik
    Expression
    Biased expression in testis adult (RPKM 10.0), genital fat pad adult (RPKM 7.3) and 7 other tissues See more
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    Genomic context

    See Dmrtc1a in Genome Data Viewer
    Location:
    X; X D
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101946822..101953753, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102903216..102910145, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (100098560..100104026, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700031F05 gene Neighboring gene predicted pseudogene 9133 Neighboring gene RIKEN cDNA 1700011M02 gene Neighboring gene RIKEN cDNA 1700018G05 gene Neighboring gene predicted pseudogene 5126

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    doublesex- and mab-3-related transcription factor C1
    Names
    doublesex and mab-3 related transcription factor 8.1
    likely ortologue to human doublesex-and mab-3-related transcription factor C1 (Dmrtc1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038616.2NP_001033705.2  doublesex- and mab-3-related transcription factor C1 isoform c

      See identical proteins and their annotated locations for NP_001033705.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two 5' exons and an internal segment in the 3' region, but has an alternate 5' sequence, as compared to variant 1. The resulting isoform (c) is shorter and has different N- and C-termini, as compared to isoform a.
      Source sequence(s)
      AK006548, AL773565, BB310814, BC147175, DQ316774
      Consensus CDS
      CCDS53161.1
      UniProtKB/Swiss-Prot
      Q9D9R7
      UniProtKB/TrEMBL
      B1AX34
      Related
      ENSMUSP00000113569.2, ENSMUST00000121197.8
      Conserved Domains (1) summary
      pfam15791
      Location:68180
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    2. NM_027591.3NP_081867.1  doublesex- and mab-3-related transcription factor C1 isoform a

      See identical proteins and their annotated locations for NP_081867.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AK014934, AL773565
      Consensus CDS
      CCDS30327.1
      UniProtKB/Swiss-Prot
      Q9D9R7
      UniProtKB/TrEMBL
      B1AX34
      Related
      ENSMUSP00000033686.2, ENSMUST00000033686.2
      Conserved Domains (1) summary
      pfam15791
      Location:113190
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    3. NM_029378.2NP_083654.1  doublesex- and mab-3-related transcription factor C1 isoform b

      See identical proteins and their annotated locations for NP_083654.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two 5' exons but has an alternate 5' sequence, as compared to variant 1. The resulting isoform (b) is shorter and has a different N-terminus, as compared to isoform a.
      Source sequence(s)
      BB310814, DQ316773
      Consensus CDS
      CCDS53162.1
      UniProtKB/Swiss-Prot
      Q9D9R7
      Related
      ENSMUSP00000112572.2, ENSMUST00000120808.8
      Conserved Domains (1) summary
      pfam15791
      Location:68145
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101946822..101953753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017318619.3XP_017174108.1  doublesex- and mab-3-related transcription factor C1 isoform X2

      Conserved Domains (1) summary
      pfam15791
      Location:73187
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    2. XM_006528280.5XP_006528343.1  doublesex- and mab-3-related transcription factor C1 isoform X1

      Related
      ENSMUSP00000112458.2, ENSMUST00000119624.8
      Conserved Domains (1) summary
      pfam15791
      Location:112226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
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