Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 [ Mus musculus (house mouse) ]

    Gene ID: 103172, updated on 29-Jun-2021

    Summary

    Official Symbol
    Chchd10provided by MGI
    Official Full Name
    coiled-coil-helix-coiled-coil-helix domain containing 10provided by MGI
    Primary source
    MGI:MGI:2143558
    See related
    Ensembl:ENSMUSG00000049422
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ndg; Ndg2; AI267078; 1620401E04Rik
    Expression
    Biased expression in adrenal adult (RPKM 1343.9), duodenum adult (RPKM 646.7) and 10 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Chchd10 in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (75768964..75773584)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (75933130..75937750)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (75398318..75400479)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 Neighboring gene matrix metallopeptidase 11 Neighboring gene predicted gene 867 Neighboring gene pre-B lymphocyte gene 3 Neighboring gene 60S ribosomal protein L27 pseudogene Neighboring gene predicted gene, 40698 Neighboring gene predicted gene 5134

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of MICOS complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial intermembrane space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial
    Names
    Nur77 downstream gene 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175329.4NP_780538.2  coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial

      See identical proteins and their annotated locations for NP_780538.2

      Status: VALIDATED

      Source sequence(s)
      BC083357, BM934773, W16247
      Consensus CDS
      CCDS23938.1
      UniProtKB/TrEMBL
      Q7TNL9
      Related
      ENSMUSP00000151675.2, ENSMUST00000219839.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      75768964..75773584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155455.1XP_036011348.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial isoform X1

      Related
      ENSMUSP00000059575.7, ENSMUST00000058906.7
    Support Center