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    Pag1 phosphoprotein associated with glycosphingolipid microdomains 1 [ Mus musculus (house mouse) ]

    Gene ID: 94212, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pag1provided by MGI
    Official Full Name
    phosphoprotein associated with glycosphingolipid microdomains 1provided by MGI
    Primary source
    MGI:MGI:2443160
    See related
    Ensembl:ENSMUSG00000027508
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cb; Cbp; Pag; F730007C19Rik
    Expression
    Broad expression in thymus adult (RPKM 20.1), spleen adult (RPKM 7.9) and 23 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pag1 in Genome Data Viewer
    Location:
    3; 3 A1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (9752539..9898744, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (9687479..9833684, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (9691898..9833630, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 704 Neighboring gene predicted gene, 54189 Neighboring gene predicted gene, 33169 Neighboring gene stromal cell derived factor 2 pseudogene Neighboring gene predicted gene, 33273 Neighboring gene peptidylprolyl isomerase D (cyclophilin D) pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables SH2 domain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables SH2 domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in membrane raft IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane raft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane raft TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    phosphoprotein associated with glycosphingolipid-enriched microdomains 1
    Names
    Csk-binding protein
    phosphoprotein transmembrane adaptor 1
    phosphoprotein-associated with GEMs
    transmembrane phosphoprotein Cbp

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195031.1NP_001181960.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1

      See identical proteins and their annotated locations for NP_001181960.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (A) represents the longer transcript. Both variants A and B encode the same protein.
      Source sequence(s)
      AC129945, AC156996, AK040230
      Consensus CDS
      CCDS17235.1
      UniProtKB/Swiss-Prot
      Q3U1F9
      UniProtKB/TrEMBL
      A6H659
      Related
      ENSMUSP00000124529.2, ENSMUST00000161949.8
      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched
    2. NM_053182.5NP_444412.2  phosphoprotein associated with glycosphingolipid-enriched microdomains 1

      See identical proteins and their annotated locations for NP_444412.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (B) differs in the 5' UTR compared to variant A. Both variants A and B encode the same protein.
      Source sequence(s)
      AC129945, AC156996, AK089329
      Consensus CDS
      CCDS17235.1
      UniProtKB/Swiss-Prot
      Q3U1F9
      UniProtKB/TrEMBL
      A6H659
      Related
      ENSMUSP00000104021.3, ENSMUST00000108384.9
      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      9752539..9898744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163426.1XP_036019319.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X1

      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched
    2. XM_011248151.4XP_011246453.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X1

      See identical proteins and their annotated locations for XP_011246453.1

      UniProtKB/Swiss-Prot
      Q3U1F9
      UniProtKB/TrEMBL
      A6H659
      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched
    3. XM_030252926.2XP_030108786.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X1

      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched
    4. XM_006530107.1XP_006530170.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X1

      See identical proteins and their annotated locations for XP_006530170.1

      UniProtKB/Swiss-Prot
      Q3U1F9
      UniProtKB/TrEMBL
      A6H659
      Conserved Domains (1) summary
      pfam15347
      Location:2429
      PAG; Phosphoprotein associated with glycosphingolipid-enriched
    5. XM_030252928.1XP_030108788.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X2

    6. XM_030252927.1XP_030108787.1  phosphoprotein associated with glycosphingolipid-enriched microdomains 1 isoform X2

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