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    Nrep neuronal regeneration related protein [ Mus musculus (house mouse) ]

    Gene ID: 27528, updated on 6-May-2021

    Summary

    Official Symbol
    Nrepprovided by MGI
    Official Full Name
    neuronal regeneration related proteinprovided by MGI
    Primary source
    MGI:MGI:99444
    See related
    Ensembl:ENSMUSG00000042834
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P31; Harp; P311; PTZ1; Sez1; PTZ17; SEZ17; D0H4S11; AI325076; D0H4S114
    Expression
    Biased expression in CNS E18 (RPKM 316.2), whole brain E14.5 (RPKM 274.8) and 8 other tissues See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Nrep in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (33570072..33597444, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (33437019..33464365, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (33596673..33623683, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46640 Neighboring gene VISTA enhancer mm76 Neighboring gene O-sialoglycoprotein endopeptidase pseudogene Neighboring gene predicted gene 10549 Neighboring gene predicted gene, 41684 Neighboring gene VISTA enhancer mm15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    neuronal regeneration-related protein
    Names
    high-altitude regulated protein
    neuronal protein 3.1
    protein p311

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109988.1NP_001103458.1  neuronal regeneration-related protein

      See identical proteins and their annotated locations for NP_001103458.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
      Source sequence(s)
      AC115117, AK020629
      Consensus CDS
      CCDS37756.1
      UniProtKB/Swiss-Prot
      Q07475
      UniProtKB/TrEMBL
      Q542Q5
      Related
      ENSMUSP00000130297.2, ENSMUST00000168890.2
      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)
    2. NM_001109989.2NP_001103459.1  neuronal regeneration-related protein

      See identical proteins and their annotated locations for NP_001103459.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
      Source sequence(s)
      AC115117, CX768079
      Consensus CDS
      CCDS37756.1
      UniProtKB/Swiss-Prot
      Q07475
      UniProtKB/TrEMBL
      Q542Q5
      Related
      ENSMUSP00000157912.2, ENSMUST00000237066.2
      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)
    3. NM_001267717.1NP_001254646.1  neuronal regeneration-related protein

      See identical proteins and their annotated locations for NP_001254646.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
      Source sequence(s)
      AC115117
      Consensus CDS
      CCDS37756.1
      UniProtKB/Swiss-Prot
      Q07475
      UniProtKB/TrEMBL
      Q542Q5
      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)
    4. NM_053078.4NP_444308.1  neuronal regeneration-related protein

      See identical proteins and their annotated locations for NP_444308.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the functional protein. Variants 1, 2, 3, 4 and 5 encode the same protein.
      Source sequence(s)
      AK048361, AV321356, CJ148521
      Consensus CDS
      CCDS37756.1
      UniProtKB/Swiss-Prot
      Q07475
      UniProtKB/TrEMBL
      Q542Q5
      Related
      ENSMUSP00000058132.9, ENSMUST00000051087.16
      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      33570072..33597444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250488.2XP_030106348.1  neuronal regeneration-related protein isoform X1

      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)
    2. XM_036161164.1XP_036017057.1  neuronal regeneration-related protein isoform X1

      Conserved Domains (1) summary
      pfam11092
      Location:368
      Alveol-reg_P311; Neuronal protein 3.1 (p311)
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