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    Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 73266, updated on 11-Jun-2024

    Summary

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    Official Symbol
    Speer6-ps1provided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:1920516
    See related
    Ensembl:ENSMUSG00000121349 AllianceGenome:MGI:1920516
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AlbCre; Alb-cre; SPEER-6; cr<Alb>; Alb<cre>; albumin-cre; 1700039A02Rik; Tg(Alb-cre)21Mgn
    Expression
    Restricted expression toward testis adult (RPKM 6.2) See more
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    Genomic context

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    See Speer6-ps1 in Genome Data Viewer
    Location:
    13 A1; 13 1.78 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (3199475..3239678)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (3149475..3189678)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 4 pseudogene Neighboring gene polypyrimidine tract binding protein 1 pseudogene Neighboring gene predicted gene, 40644 Neighboring gene STARR-seq mESC enhancer starr_33466 Neighboring gene STARR-seq mESC enhancer starr_33467 Neighboring gene STARR-seq mESC enhancer starr_33468 Neighboring gene predicted gene, 40648 Neighboring gene STARR-seq mESC enhancer starr_33469 Neighboring gene STARR-seq mESC enhancer starr_33470 Neighboring gene STARR-seq mESC enhancer starr_33471 Neighboring gene predicted gene, 40653

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Recombinant covalently closed circular hepatitis B virus DNA induces prolonged viral persistence in immunocompetent mice. Qi Z, et al. J Virol, 2014 Jul. PMID 24807718, Free PMC Article
    2. The role of cytochrome P450-dependent metabolism in the regulation of mouse hepatic growth hormone signaling components and target genes by 3-methylcholanthrene. Lee C, et al. Drug Metab Dispos, 2013 Feb. PMID 23169610, Free PMC Article
    3. Aberrant transcription and post-transcriptional processing of hepatitis C virus non-structural genes in transgenic mice. Desai MM, et al. Transgenic Res, 2011 Dec. PMID 21347690, Free PMC Article
    4. DNA excision in liver by an albumin-Cre transgene occurs progressively with age. Postic C, et al. Genesis, 2000 Feb. PMID 10686614
    5. Selective Hepatic Cbs Knockout Aggravates Liver Damage, Endothelial Dysfunction and ROS Stress in Mice Fed a Western Diet. Lambooy S, et al. Int J Mol Sci, 2023 Apr 10. PMID 37108182, Free PMC Article

    See all (1368) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Other Names

    • sperm-associated glutamate (E)-rich protein 6, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001581.3 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC124744, AC125190
      Related
      ENSMUST00000223482.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      3199475..3239678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_028486.1: Suppressed sequence

      Description
      NM_028486.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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