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    1700067K01Rik RIKEN cDNA 1700067K01 gene [ Mus musculus (house mouse) ]

    Gene ID: 73453, updated on 5-Mar-2024

    Summary

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    Official Symbol
    1700067K01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700067K01 geneprovided by MGI
    Primary source
    MGI:MGI:1920703
    See related
    Ensembl:ENSMUSG00000046408 AllianceGenome:MGI:1920703
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within in utero embryonic development. Orthologous to human C19orf67 (chromosome 19 open reading frame 67). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 8.8), kidney adult (RPKM 1.5) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 C2; 8 40.24 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84727145..84731399)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84000516..84004770)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP dependent, catalytic, alpha Neighboring gene STARR-seq mESC enhancer starr_22104 Neighboring gene sterile alpha motif domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E882 Neighboring gene microRNA 8111 Neighboring gene microRNA 1199 Neighboring gene MISP family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A staging system for correct phenotype interpretation of mouse embryos harvested on embryonic day 14 (E14.5). Geyer SH, et al. J Anat, 2017 May. PMID 28185240, Free PMC Article
    2. Highly variable penetrance of abnormal phenotypes in embryonic lethal knockout mice. Wilson R, et al. Wellcome Open Res, 2016. PMID 27996060, Free PMC Article
    3. Placentation defects are highly prevalent in embryonic lethal mouse mutants. Perez-Garcia V, et al. Nature, 2018 Mar 22. PMID 29539633, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0575 protein C19orf67 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183097.3 → NP_898920.3  UPF0575 protein C19orf67 homolog

      Status: VALIDATED

      Source sequence(s)
      AC156028
      Consensus CDS
      CCDS22464.2
      UniProtKB/Swiss-Prot
      F6UZF9, Q8CF25
      UniProtKB/TrEMBL
      A0A668KLB1
      Related
      ENSMUSP00000159263.2, ENSMUST00000239176.2
      Conserved Domains (1) summary
      pfam11771
      Location:176 → 332
      DUF3314; Protein of unknown function (DUF3314)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      84727145..84731399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531403.3 → XP_006531466.1  UPF0575 protein C19orf67 homolog isoform X1

      See identical proteins and their annotated locations for XP_006531466.1

      UniProtKB/Swiss-Prot
      F6UZF9, Q8CF25
      UniProtKB/TrEMBL
      A0A6E0D3Q4
      Related
      ENSMUSP00000062468.9, ENSMUST00000060357.15
      Conserved Domains (1) summary
      pfam11771
      Location:177 → 333
      DUF3314; Protein of unknown function (DUF3314)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CF25.2 GenPept UniProtKB/Swiss-Prot:Q8CF25

    Gene LinkOut

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