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    Tmem169 transmembrane protein 169 [ Mus musculus (house mouse) ]

    Gene ID: 271711, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmem169provided by MGI
    Official Full Name
    transmembrane protein 169provided by MGI
    Primary source
    MGI:MGI:2442781
    See related
    Ensembl:ENSMUSG00000026188 AllianceGenome:MGI:2442781
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A830020B06Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM169 (transmembrane protein 169). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in CNS E18 (RPKM 7.1), CNS E14 (RPKM 6.4) and 8 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    1 C3; 1 36.48 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (72323554..72342263)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (72284351..72303104)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D230017M19 gene Neighboring gene predicted gene, 25939 Neighboring gene peroxisomal trans-2-enoyl-CoA reductase Neighboring gene predicted gene, 51631 Neighboring gene STARR-positive B cell enhancer ABC_E4322 Neighboring gene STARR-seq mESC enhancer starr_01273 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 5 Neighboring gene STARR-seq mESC enhancer starr_01274 Neighboring gene predicted gene, 39661

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 169

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418282.1 → NP_001405211.1  transmembrane protein 169

      Status: VALIDATED

      Source sequence(s)
      AC114905
      UniProtKB/Swiss-Prot
      Q8BG50

    2. NM_001418283.1 → NP_001405212.1  transmembrane protein 169

      Status: VALIDATED

      Source sequence(s)
      AC114905
      UniProtKB/Swiss-Prot
      Q8BG50

    3. NM_001418284.1 → NP_001405213.1  transmembrane protein 169

      Status: VALIDATED

      Source sequence(s)
      AC114905
      UniProtKB/Swiss-Prot
      Q8BG50

    4. NM_175564.5 → NP_780773.1  transmembrane protein 169

      See identical proteins and their annotated locations for NP_780773.1

      Status: VALIDATED

      Source sequence(s)
      AC114905
      Consensus CDS
      CCDS15033.1
      UniProtKB/Swiss-Prot
      Q8BG50
      Related
      ENSMUSP00000027380.6, ENSMUST00000027380.12
      Conserved Domains (1) summary
      pfam15052
      Location:147 → 277
      TMEM169; TMEM169 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      72323554..72342263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BG50.1 GenPept UniProtKB/Swiss-Prot:Q8BG50

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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