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    Scd4 stearoyl-coenzyme A desaturase 4 [ Mus musculus (house mouse) ]

    Gene ID: 329065, updated on 23-Jun-2021

    Summary

    Official Symbol
    Scd4provided by MGI
    Official Full Name
    stearoyl-coenzyme A desaturase 4provided by MGI
    Primary source
    MGI:MGI:2670997
    See related
    Ensembl:ENSMUSG00000050195
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ACOD4
    Expression
    Biased expression in mammary gland adult (RPKM 44.2), subcutaneous fat pad adult (RPKM 43.9) and 9 other tissues See more
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    Genomic context

    See Scd4 in Genome Data Viewer
    Location:
    19; 19 C3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (44321765..44335182)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (44333326..44346743)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (44407816..44421233)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118568395 Neighboring gene predicted gene, 41853 Neighboring gene stearoyl-Coenzyme A desaturase 2 Neighboring gene microRNA 5114 Neighboring gene stearoyl-Coenzyme A desaturase 1 Neighboring gene predicted gene, 35406

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC48154

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in integral component of endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    stearoyl-CoA desaturase 4
    Names
    acyl-CoA desaturase 4
    delta(9)-desaturase 4
    fatty acid desaturase 4
    NP_899039.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183216.3NP_899039.2  stearoyl-CoA desaturase 4

      See identical proteins and their annotated locations for NP_899039.2

      Status: VALIDATED

      Source sequence(s)
      AC123853
      Consensus CDS
      CCDS29849.1
      UniProtKB/Swiss-Prot
      Q6T707
      Related
      ENSMUSP00000059860.9, ENSMUST00000058856.9
      Conserved Domains (2) summary
      cd03505
      Location:94331
      Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
      pfam00487
      Location:94300
      FA_desaturase; Fatty acid desaturase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      44321765..44335182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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