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    Slc15a3 solute carrier family 15, member 3 [ Mus musculus (house mouse) ]

    Gene ID: 65221, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc15a3provided by MGI
    Official Full Name
    solute carrier family 15, member 3provided by MGI
    Primary source
    MGI:MGI:1929691
    See related
    Ensembl:ENSMUSG00000024737
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ci; Ci1; cI-; cI-1
    Expression
    Broad expression in spleen adult (RPKM 18.7), lung adult (RPKM 15.6) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Slc15a3 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10819908..10835279)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10842544..10857915)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10917034..10932405)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A430093F15 gene Neighboring gene CD6 antigen Neighboring gene transmembrane protein 132A Neighboring gene transmembrane protein 109 Neighboring gene pre-mRNA processing factor 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables dipeptide transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables peptidoglycan transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in lysosomal membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in lysosomal membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    solute carrier family 15 member 3
    Names
    cAMP inducible gene 1
    cAMP-inducible gene 1 protein
    peptide transporter 3
    peptide/histidine transporter 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023044.2NP_075531.2  solute carrier family 15 member 3

      See identical proteins and their annotated locations for NP_075531.2

      Status: VALIDATED

      Source sequence(s)
      AC132402
      Consensus CDS
      CCDS29588.1
      UniProtKB/Swiss-Prot
      Q8BPX9
      Related
      ENSMUSP00000025646.3, ENSMUST00000025646.3
      Conserved Domains (2) summary
      COG3104
      Location:41567
      PTR2; Dipeptide/tripeptide permease [Amino acid transport and metabolism]
      cl21472
      Location:179515
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      10819908..10835279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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