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    Mroh5 maestro heat-like repeat family member 5 [ Mus musculus (house mouse) ]

    Gene ID: 268816, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Mroh5provided by MGI
    Official Full Name
    maestro heat-like repeat family member 5provided by MGI
    Primary source
    MGI:MGI:2685474
    See related
    Ensembl:ENSMUSG00000072487 AllianceGenome:MGI:2685474
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm628
    Summary
    Orthologous to human MROH5 (maestro heat like repeat family member 5 (gene/pseudogene)). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 18.8) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    15 D3; 15 34.06 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (73658785..73711520, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (73786936..73839671, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 20 Neighboring gene STARR-positive B cell enhancer mm9_chr15:73548453-73548754 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:73562951-73563152 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:73565412-73565613 Neighboring gene STARR-seq mESC enhancer starr_38975 Neighboring gene protein tyrosine phosphatase 4a3 Neighboring gene predicted gene, 22106 Neighboring gene NADH:ubiquinone oxidoreductase subunit B4C Neighboring gene predicted gene 6569 Neighboring gene predicted gene, 52173 Neighboring gene STARR-seq mESC enhancer starr_38977 Neighboring gene predicted gene, 32355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    maestro heat-like repeat family member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033365.3 → NP_001028537.1  maestro heat-like repeat family member 5 isoform 2

      See identical proteins and their annotated locations for NP_001028537.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon and contains another alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC119884, AK158799
      Consensus CDS
      CCDS27520.1
      UniProtKB/TrEMBL
      B7ZWG8, Q3TY91
      Related
      ENSMUSP00000071366.6, ENSMUST00000071419.12

    2. NM_001368162.1 → NP_001355091.1  maestro heat-like repeat family member 5 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK158799, BC150895
      Consensus CDS
      CCDS88777.1
      UniProtKB/TrEMBL
      B7ZWG8, B9EKG2
      Related
      ENSMUSP00000105648.3, ENSMUST00000110021.3

    3. NM_001428951.1 → NP_001415880.1  maestro heat-like repeat family member 5 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC116769, AC119884

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      73658785..73711520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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