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    Syngr1 synaptogyrin 1 [ Mus musculus (house mouse) ]

    Gene ID: 20972, updated on 23-Jun-2021

    Summary

    Official Symbol
    Syngr1provided by MGI
    Official Full Name
    synaptogyrin 1provided by MGI
    Primary source
    MGI:MGI:1328323
    See related
    Ensembl:ENSMUSG00000022415
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p2; p29; Syng; R75468; Syngr1b
    Expression
    Biased expression in cerebellum adult (RPKM 56.1), cortex adult (RPKM 51.4) and 14 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Syngr1 in Genome Data Viewer
    Location:
    15; 15 E1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (79975535..80003702)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (80091334..80119501)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (79921764..79949931)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 43 Neighboring gene ribosomal protein L3 Neighboring gene predicted gene, 24204 Neighboring gene predicted gene, 31134 Neighboring gene predicted gene, 31253 Neighboring gene TGF-beta activated kinase 1/MAP3K7 binding protein 1 Neighboring gene mannoside acetylglucosaminyltransferase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in neuromuscular junction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    is_active_in synaptic vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009303.2NP_033329.1  synaptogyrin-1 isoform 1b

      See identical proteins and their annotated locations for NP_033329.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1b) includes a different segment for its 3' coding region and 3' UTR, as compared to variant 1a. The encoded isoform (1b) has a distinct and shorter C-terminus, compared to isoform 1a.
      Source sequence(s)
      AK010442, AU043471, BB646315
      Consensus CDS
      CCDS27658.1
      UniProtKB/Swiss-Prot
      O55100
      UniProtKB/TrEMBL
      Q3U6D7
      Related
      ENSMUSP00000009728.7, ENSMUST00000009728.13
      Conserved Domains (1) summary
      pfam01284
      Location:21167
      MARVEL; Membrane-associating domain
    2. NM_207708.1NP_997591.1  synaptogyrin-1 isoform 1a

      See identical proteins and their annotated locations for NP_997591.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1a) represents the longer transcript and it encodes the longer protein (isoform 1a).
      Source sequence(s)
      AA000705, AK002972, AK044007, BB646315, BE859913
      Consensus CDS
      CCDS27657.1
      UniProtKB/Swiss-Prot
      O55100
      Related
      ENSMUSP00000009727.6, ENSMUST00000009727.12
      Conserved Domains (1) summary
      pfam01284
      Location:21167
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      79975535..80003702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520695.1XP_006520758.1  synaptogyrin-1 isoform X1

      Conserved Domains (1) summary
      pfam01284
      Location:6145
      MARVEL; Membrane-associating domain
    2. XM_030248440.1XP_030104300.1  synaptogyrin-1 isoform X2

      Conserved Domains (1) summary
      pfam01284
      Location:6145
      MARVEL; Membrane-associating domain
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