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    Ms4a6d membrane-spanning 4-domains, subfamily A, member 6D [ Mus musculus (house mouse) ]

    Gene ID: 68774, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ms4a6dprovided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 6Dprovided by MGI
    Primary source
    MGI:MGI:1916024
    See related
    Ensembl:ENSMUSG00000024679
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ms4a; Ms4a11; AI447446; 1110058E16Rik
    Expression
    Ubiquitous expression in liver E18 (RPKM 3.4), mammary gland adult (RPKM 2.2) and 27 other tissues See more
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    Genomic context

    See Ms4a6d in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11563970..11582168, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11586606..11604804, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11661096..11679294, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 4D Neighboring gene membrane-spanning 4-domains subfamily A member 6D-like Neighboring gene predicted gene, 24599 Neighboring gene membrane-spanning 4-domains, subfamily A, member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    membrane-spanning 4-domains subfamily A member 6D
    Names
    CD20 antigen-like 8
    membrane-spanning 4-domains, subfamily A, member 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026835.2NP_081111.1  membrane-spanning 4-domains subfamily A member 6D

      See identical proteins and their annotated locations for NP_081111.1

      Status: VALIDATED

      Source sequence(s)
      AI447446, AK004295, BG087418
      Consensus CDS
      CCDS29603.1
      UniProtKB/Swiss-Prot
      Q99N07
      UniProtKB/TrEMBL
      Q2TVW7
      Related
      ENSMUSP00000025582.5, ENSMUST00000025582.11
      Conserved Domains (1) summary
      pfam04103
      Location:47207
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11563970..11582168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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