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    Ldlrad2 low density lipoprotein receptor class A domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 435811, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ldlrad2provided by MGI
    Official Full Name
    low density lipoprotein receptor class A domain containing 2provided by MGI
    Primary source
    MGI:MGI:3588210
    See related
    Ensembl:ENSMUSG00000094035
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    See Ldlrad2 in Genome Data Viewer
    Location:
    4; 4 D3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (137298186..137309429, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (137570875..137582118, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (137126791..137131095, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700013G24 gene Neighboring gene predicted gene 13010 Neighboring gene perlecan (heparan sulfate proteoglycan 2) Neighboring gene microRNA 7018 Neighboring gene ubiquitin specific peptidase 48 Neighboring gene predicted gene, 54263 Neighboring gene Rap1 GTPase-activating protein Neighboring gene RAP1 GTPase activating protein, opposite strand

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    low-density lipoprotein receptor class A domain-containing protein 2
    Names
    low density lipoprotein receptor A domain containing 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033979.2NP_001029151.1  low-density lipoprotein receptor class A domain-containing protein 2

      See identical proteins and their annotated locations for NP_001029151.1

      Status: VALIDATED

      Source sequence(s)
      BX000694
      Consensus CDS
      CCDS18819.1
      UniProtKB/TrEMBL
      Q3V0V0
      Related
      ENSMUSP00000136854.2, ENSMUST00000178923.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      137298186..137309429 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539013.4XP_006539076.1  low-density lipoprotein receptor class A domain-containing protein 2 isoform X1

      Related
      ENSMUSP00000158970.2, ENSMUST00000238941.2
      Conserved Domains (2) summary
      smart00192
      Location:182211
      LDLa; Low-density lipoprotein receptor domain class A
      cl00049
      Location:119174
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
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