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    Pwwp4a PWWP domain containing 4A [ Mus musculus (house mouse) ]

    Gene ID: 574404, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Pwwp4aprovided by MGI
    Official Full Name
    PWWP domain containing 4Aprovided by MGI
    Primary source
    MGI:MGI:3710618
    See related
    Ensembl:ENSMUSG00000067771 AllianceGenome:MGI:3710618
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm14685
    Expression
    Biased expression in placenta adult (RPKM 8.0), testis adult (RPKM 1.5) and 2 other tissues See more
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    Genomic context

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    See Pwwp4a in Genome Data Viewer
    Location:
    X A7.3; X 37.29 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (72160636..72172875)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (73117030..73129269)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene X-linked lymphocyte-regulated 4A Neighboring gene X-linked lymphocyte-regulated 3A Neighboring gene X-linked lymphocyte-regulated 5A Neighboring gene PWWP domain containing 4B Neighboring gene X-linked lymphocyte-regulated 5B Neighboring gene STARR-seq mESC enhancer starr_47342 Neighboring gene STARR-seq mESC enhancer starr_47343 Neighboring gene spindlin family, member 2D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC106740

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC574404

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025383.2 → NP_001020554.1  uncharacterized protein LOC574404

      See identical proteins and their annotated locations for NP_001020554.1

      Status: VALIDATED

      Source sequence(s)
      BX813330
      Consensus CDS
      CCDS53093.1
      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      72160636..72172875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528188.3 → XP_006528251.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528251.1

      UniProtKB/TrEMBL
      Q52KH6
      Related
      ENSMUSP00000085806.3, ENSMUST00000088459.9
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    2. XM_006528182.4 → XP_006528245.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528245.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    3. XM_006528186.3 → XP_006528249.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528249.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    4. XM_006528185.2 → XP_006528248.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528248.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    5. XM_006528187.2 → XP_006528250.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528250.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    6. XM_006528181.2 → XP_006528244.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528244.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    7. XM_006528190.2 → XP_006528253.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528253.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    8. XM_006528184.3 → XP_006528247.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528247.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    9. XM_006528183.3 → XP_006528246.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528246.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    10. XM_006528189.3 → XP_006528252.1  uncharacterized protein LOC574404 isoform X1

      See identical proteins and their annotated locations for XP_006528252.1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    11. XM_036162052.1 → XP_036017945.1  uncharacterized protein LOC574404 isoform X1

      UniProtKB/TrEMBL
      Q52KH6
      Conserved Domains (1) summary
      cd06080
      Location:380 → 459
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...
    Nucleotide Protein Strain
    Heading Accession and Version

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