U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ism2 isthmin 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681936, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ism2provided by RGD
    Official Full Name
    isthmin 2provided by RGD
    Primary source
    RGD:1589343
    See related
    Ensembl:ENSRNOG00000050312 AllianceGenome:RGD:1589343
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human ISM2 (isthmin 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 23.3), Brain (RPKM 7.7) and 5 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ism2 in Genome Data Viewer
    Location:
    6q31
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (112652772..112675098, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (106921213..106944291, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (111309054..111329967, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479236 Neighboring gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog Neighboring gene activator of Hsp90 ATPase activity 1 Neighboring gene uncharacterized LOC134479239 Neighboring gene serine palmitoyltransferase, long chain base subunit 2 Neighboring gene uncharacterized LOC134479238 Neighboring gene uncharacterized LOC120103582

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    isthmin-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      112652772..112675098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262685.1 → XP_063118755.1  isthmin-2 isoform X3

    2. XM_063262684.1 → XP_063118754.1  isthmin-2 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A9X1

    3. XM_008764895.4 → XP_008763117.1  isthmin-2 isoform X1

      UniProtKB/TrEMBL
      M0RD17
      Related
      ENSRNOP00000067510.2
      Conserved Domains (1) summary
      cl02758
      Location:316 → 476
      AMOP; AMOP domain

    RNA

    1. XR_010052295.1 RNA Sequence

    2. XR_010052293.1 RNA Sequence

    3. XR_005506125.2 RNA Sequence

    4. XR_010052294.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools