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    DAB1-AS1 DAB1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101926890, updated on 10-Oct-2023

    Summary

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    Official Symbol
    DAB1-AS1provided by HGNC
    Official Full Name
    DAB1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:49443
    See related
    Ensembl:ENSG00000226759 AllianceGenome:HGNC:49443
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 15.8) See more
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    Genomic context

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    Location:
    1p32.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (57860581..57863216)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (57739439..57742074)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (58326253..58328888)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DAB adaptor protein 1 Neighboring gene uncharacterized LOC105378747 Neighboring gene Sharpr-MPRA regulatory region 9062 Neighboring gene Sharpr-MPRA regulatory region 9243 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:57823007-57823637 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:58063767-58063932 Neighboring gene NANOG hESC enhancer GRCh37_chr1:58071492-58072000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:58088857-58089356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:58088355-58088856 Neighboring gene ribosomal protein S20 pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:58307132-58307294 Neighboring gene uncharacterized LOC105378746 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:58468631-58469260 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:58469261-58469890 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:58472761-58473729 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:58496743-58497320 Neighboring gene Sharpr-MPRA regulatory region 8485 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104362.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longest transcript.
      Source sequence(s)
      AL109944
      Related
      ENST00000416598.2

    2. NR_104363.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice donor site compared to variant 1.
      Source sequence(s)
      AL109944
      Related
      ENST00000667877.1

    3. NR_104364.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice donor site compared to variant 1.
      Source sequence(s)
      AL109944

    4. NR_104365.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice donor site and polyA site compared to variant 1.
      Source sequence(s)
      AL109944
      Related
      ENST00000434141.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      57860581..57863216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      57739439..57742074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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