U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm2087 predicted gene 2087 [ Mus musculus (house mouse) ]

    Gene ID: 100039186, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm2087provided by MGI
    Official Full Name
    predicted gene 2087provided by MGI
    Primary source
    MGI:MGI:3780254
    See related
    Ensembl:ENSMUSG00000099718 AllianceGenome:MGI:3780254
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm2087 in Genome Data Viewer
    Location:
    9 E2; 9 45.45 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (83313600..83336627)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (83431547..83454574)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118567674 Neighboring gene predicted gene, 40536 Neighboring gene ribosomal protein S27A, pseudogene 2 Neighboring gene Leber congenital amaurosis 5 (human) Neighboring gene STARR-positive B cell enhancer mm9_chr9:83334629-83334930 Neighboring gene STARR-seq mESC enhancer starr_24788 Neighboring gene ribosomal protein S15A, pseudogene Neighboring gene STARR-seq mESC enhancer starr_24789 Neighboring gene SH3 domain binding glutamic acid-rich protein like 2 Neighboring gene STARR-seq mESC enhancer starr_24791 Neighboring gene predicted gene, 39384

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_102437.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK076672, BB614956
      Related
      ENSMUST00000188217.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      83313600..83336627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_016661.1: Suppressed sequence

      Description
      NG_016661.1: This RefSeq was permanently suppressed because it is now thought that, although this gene does not encode a protein, it is not considered a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases