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    CLK2P1 CDC like kinase 2, pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 1197, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CLK2P1provided by HGNC
    Official Full Name
    CDC like kinase 2, pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:2070
    See related
    AllianceGenome:HGNC:2070
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CLK2P
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    Genomic context

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    Location:
    7p15.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (23584716..23586527, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (23724067..23725878, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (23624335..23626146, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene transformer 2 alpha homolog Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:23570658-23571228 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:23571229-23571798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:23571837-23572338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:23572339-23572838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25737 Neighboring gene ATP binding cassette subfamily E member 1 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:23620581-23620772 Neighboring gene uncharacterized LOC105375187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18014 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:23645851-23645985 Neighboring gene coiled-coil domain containing 126 Neighboring gene FCF1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chromosomal mapping of three human LAMMER protein-kinase-encoding genes. Talmadge CB, et al. Hum Genet, 1998 Oct. PMID 9856501
    2. Characterization by cDNA cloning of two new human protein kinases. Evidence by sequence comparison of a new family of mammalian protein kinases. Hanes J, et al. J Mol Biol, 1994 Dec 16. PMID 7990150
    3. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • CDC-like kinase 2, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002711.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006026, BC022025

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      23584716..23586527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      23724067..23725878 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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