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    Gm13648 predicted gene 13648 [ Mus musculus (house mouse) ]

    Gene ID: 100415901, updated on 8-Mar-2024

    Summary

    Official Symbol
    Gm13648provided by MGI
    Official Full Name
    predicted gene 13648provided by MGI
    Primary source
    MGI:MGI:3652033
    See related
    Ensembl:ENSMUSG00000086549 AllianceGenome:MGI:3652033
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in colon adult (RPKM 19.2), stomach adult (RPKM 15.8) and 12 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gm13648 in Genome Data Viewer
    Location:
    4 E2; 4 87.94 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (156137172..156144259, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (156052715..156059802, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16008 Neighboring gene tumor necrosis factor receptor superfamily, member 18 Neighboring gene tubulin tyrosine ligase-like family, member 10 Neighboring gene microRNA 200a Neighboring gene microRNA 429 Neighboring gene microRNA 200b Neighboring gene STARR-seq mESC enhancer starr_12282 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444299-155444408 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444441-155444699 Neighboring gene predicted gene, 52714 Neighboring gene RIKEN cDNA 9430015G10 gene Neighboring gene STARR-positive B cell enhancer ABC_E1672

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Other Names

    • miR-200b/200a/429 miRNA cluster host

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132444.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC048384
      Related
      ENSMUST00000138361.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      156137172..156144259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)