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    2610027F03Rik RIKEN cDNA 2610027F03 gene [ Mus musculus (house mouse) ]

    Gene ID: 69904, updated on 8-Feb-2024

    Summary

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    Official Symbol
    2610027F03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2610027F03 geneprovided by MGI
    Primary source
    MGI:MGI:1917154
    See related
    AllianceGenome:MGI:1917154
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E11.5 (RPKM 1.0), CNS E14 (RPKM 0.5) and 1 other tissue See more
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    Genomic context

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    Location:
    1; 1 E2.3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (120542383..120691296)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (120614654..120763567)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02064 Neighboring gene predicted gene, 41939 Neighboring gene predicted gene, 34352 Neighboring gene engrailed 1 Neighboring gene STARR-seq mESC enhancer starr_02065 Neighboring gene STARR-seq mESC enhancer starr_02066 Neighboring gene STARR-seq mESC enhancer starr_02068 Neighboring gene STARR-seq mESC enhancer starr_02069 Neighboring gene predicted gene 29345 Neighboring gene predicted gene, 34584

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. LncRNA XR_001779380 Primes Epithelial Cells for IFN-γ-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense. Gong AY, et al. mBio, 2021 Oct 26. PMID 34488445, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LncRNA XR_001779380 Primes Epithelial Cells for IFN-gamma-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense.
      Title: LncRNA XR_001779380 Primes Epithelial Cells for IFN-γ-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      120542383..120691296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_878468.2 RNA Sequence

    2. XR_878474.2 RNA Sequence

    3. XR_387323.3 RNA Sequence

    4. XR_387328.3 RNA Sequence

    5. XR_387331.3 RNA Sequence

    6. XR_001779381.2 RNA Sequence

    7. XR_387329.3 RNA Sequence

    8. XR_001779383.1 RNA Sequence

    9. XR_001779384.1 RNA Sequence

    10. XR_387324.2 RNA Sequence

    11. XR_878477.3 RNA Sequence

    12. XR_387332.2 RNA Sequence

    13. XR_001779380.1 RNA Sequence

    14. XR_004936316.1 RNA Sequence

    15. XR_001779385.1 RNA Sequence

    16. XR_004936315.1 RNA Sequence

    17. XR_004936317.1 RNA Sequence

    18. XR_001779379.1 RNA Sequence

    19. XR_001779376.1 RNA Sequence

    20. XR_001779387.1 RNA Sequence

    21. XR_001779386.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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