Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zfp935 zinc finger protein 935 [ Mus musculus (house mouse) ]

    Gene ID: 71508, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp935provided by MGI
    Official Full Name
    zinc finger protein 935provided by MGI
    Primary source
    MGI:MGI:1918758
    See related
    Ensembl:ENSMUSG00000113450
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Es113; Gm49359; 8430426H19Rik
    Expression
    Broad expression in bladder adult (RPKM 2.6), placenta adult (RPKM 2.3) and 20 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zfp935 in Genome Data Viewer
    Location:
    13; 13 B3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62600830..62614626, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62453016..62466852, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (62554376..62568172, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3604 Neighboring gene selenoprotein K, pseudogene 6 Neighboring gene predicted gene, 53788 Neighboring gene predicted gene, 21145 Neighboring gene protein C1orf43 homolog Neighboring gene zinc finger protein 934

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC107309, MGC132990

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001136496.1NP_001129968.1  KRAB zinc finger protein isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is missing an internal coding exon compared to transcript variant 1. This result in a frame-shift, and a shorter isoform (2) with a distinct C-terminus compared to isoform 1. Isoform 2 retains the 'KRAB' domain at the N-terminus.
      Source sequence(s)
      AK018441, BC087936
      Consensus CDS
      CCDS88469.1
      UniProtKB/TrEMBL
      A0A1Y7VP04
      Related
      ENSMUSP00000152739.2, ENSMUST00000223247.2
      Conserved Domains (2) summary
      smart00349
      Location:444
      KRAB; krueppel associated box
      pfam01352
      Location:440
      KRAB; KRAB box
    2. NM_178875.4NP_849206.2  KRAB zinc finger protein isoform 1

      See identical proteins and their annotated locations for NP_849206.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1) containing the 'KRAB' domain at the N-terminus and the Zn-finger domain at the C-terminus.
      Source sequence(s)
      BC087936, BC113193
      Consensus CDS
      CCDS36697.1
      UniProtKB/TrEMBL
      Q14DI0
      Related
      ENSMUSP00000152662.2, ENSMUST00000221747.2
      Conserved Domains (5) summary
      smart00349
      Location:445
      KRAB; krueppel associated box
      COG5048
      Location:130293
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:219239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:440
      KRAB; KRAB box
      pfam13465
      Location:175200
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      62600830..62614626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center