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    Stard10 START domain containing 10 [ Mus musculus (house mouse) ]

    Gene ID: 56018, updated on 10-Jul-2021

    Summary

    Official Symbol
    Stard10provided by MGI
    Official Full Name
    START domain containing 10provided by MGI
    Primary source
    MGI:MGI:1860093
    See related
    Ensembl:ENSMUSG00000030688
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pc; PCT; PC-T; TISP; CGI-5; PCTP2; Pctpl; CGI-52; PC-TP2; Sdccag; NY-C0-2; TISP-81; AV048538; NY-C0-28; Sdccag28; SdccagG28
    Expression
    Biased expression in liver adult (RPKM 468.9), colon adult (RPKM 328.7) and 14 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Stard10 in Genome Data Viewer
    Location:
    7; 7 E2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (100966293..100995833)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (101317086..101346626)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (108469833..108494826)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene FCH and double SH3 domains 2 Neighboring gene uncharacterized LOC115486538 Neighboring gene autophagy related 16-like 2 (S. cerevisiae) Neighboring gene predicted gene 20476 Neighboring gene predicted gene, 35219 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 Neighboring gene phosphodiesterase 2A, cGMP-stimulated Neighboring gene microRNA 139

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in intercellular canaliculus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in intercellular canaliculus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in microvillus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in microvillus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    START domain-containing protein 10
    Names
    PCTP-L
    PCTP-like protein
    serologically defined colon cancer antigen 10
    serologically defined colon cancer antigen 28 homolog
    stAR-related lipid transfer protein 10

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360460.1NP_001347389.1  START domain-containing protein 10 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC107638, AC129079
      Consensus CDS
      CCDS90281.1
      Related
      ENSMUSP00000129408.3, ENSMUST00000163799.9
      Conserved Domains (1) summary
      cd08871
      Location:92314
      START_STARD10-like; Lipid-binding START domain of mammalian STARD10 and related proteins
    2. NM_019990.5NP_064374.1  START domain-containing protein 10 isoform 2

      See identical proteins and their annotated locations for NP_064374.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC129079
      Consensus CDS
      CCDS21509.1
      UniProtKB/Swiss-Prot
      Q9JMD3
      UniProtKB/TrEMBL
      Q0VG22
      Related
      ENSMUSP00000032927.8, ENSMUST00000032927.14
      Conserved Domains (1) summary
      cd08871
      Location:19241
      START_STARD10-like; Lipid-binding START domain of mammalian STARD10 and related proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      100966293..100995833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153267.1XP_036009160.1  START domain-containing protein 10 isoform X1

      Conserved Domains (1) summary
      cd08871
      Location:19241
      START_STARD10-like; Lipid-binding START domain of mammalian STARD10 and related proteins
    2. XM_030242807.1XP_030098667.1  START domain-containing protein 10 isoform X1

      Related
      ENSMUSP00000133002.3, ENSMUST00000164479.9
      Conserved Domains (1) summary
      cd08871
      Location:19241
      START_STARD10-like; Lipid-binding START domain of mammalian STARD10 and related proteins
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