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    Ifitm6 interferon induced transmembrane protein 6 [ Mus musculus (house mouse) ]

    Gene ID: 213002, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ifitm6provided by MGI
    Official Full Name
    interferon induced transmembrane protein 6provided by MGI
    Primary source
    MGI:MGI:2686976
    See related
    Ensembl:ENSMUSG00000059108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    fra; Fgls5; Dspa2f; fragilis5; A330075D07
    Expression
    Biased expression in liver E18 (RPKM 126.8), spleen adult (RPKM 15.1) and 3 other tissues See more
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    Genomic context

    See Ifitm6 in Genome Data Viewer
    Location:
    7; 7 F5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (140595725..140596805, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (141015812..141016892, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (148201711..148202791, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33504 Neighboring gene interferon induced transmembrane protein 3 Neighboring gene predicted gene, 39114 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 4 Neighboring gene plakophilin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Clone Names

    • MGC129398, MGC129399

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in defense response to virus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in negative regulation of viral entry into host cell IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in negative regulation of viral genome replication IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in response to interferon-alpha IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in response to interferon-beta IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in response to interferon-gamma IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in type I interferon signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    interferon induced transmembrane protein 6
    Names
    fragilis 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033632.1NP_001028804.1  interferon induced transmembrane protein 6

      See identical proteins and their annotated locations for NP_001028804.1

      Status: PROVISIONAL

      Source sequence(s)
      BC104338
      Consensus CDS
      CCDS21997.1
      UniProtKB/TrEMBL
      Q3SXF0
      Related
      ENSMUSP00000080594.4, ENSMUST00000081924.5
      Conserved Domains (1) summary
      pfam04505
      Location:2589
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      140595725..140596805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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