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    Bhmt betaine-homocysteine methyltransferase [ Mus musculus (house mouse) ]

    Gene ID: 12116, updated on 5-Mar-2024

    Summary

    Official Symbol
    Bhmtprovided by MGI
    Official Full Name
    betaine-homocysteine methyltransferaseprovided by MGI
    Primary source
    MGI:MGI:1339972
    See related
    Ensembl:ENSMUSG00000074768 AllianceGenome:MGI:1339972
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables betaine-homocysteine S-methyltransferase activity. Acts upstream of or within methionine biosynthetic process. Predicted to be located in cytosol and extracellular exosome. Predicted to be part of protein-containing complex. Is expressed in several structures, including brain ventricle and choroid plexus; early conceptus; gonad; liver; and prostate gland. Orthologous to human BHMT (betaine--homocysteine S-methyltransferase). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in liver adult (RPKM 336.5), liver E18 (RPKM 100.1) and 1 other tissue See more
    Orthologs
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    Genomic context

    Location:
    13 C3; 13 47.87 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (93753399..93774266, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (93616891..93637758, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene cofilin 1, non-muscle pseudogene Neighboring gene predicted gene, 31977 Neighboring gene STARR-seq mESC enhancer starr_35284 Neighboring gene STARR-seq mESC enhancer starr_35285 Neighboring gene STARR-seq mESC enhancer starr_35286 Neighboring gene betaine-homocysteine methyltransferase 2 Neighboring gene STARR-seq mESC enhancer starr_35293 Neighboring gene dimethylglycine dehydrogenase precursor Neighboring gene expressed sequence AW495222

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC46866, MGC117976

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables betaine-homocysteine S-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables betaine-homocysteine S-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables betaine-homocysteine S-methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in 'de novo' L-methionine biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in L-methionine salvage IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in L-methionine salvage ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in amino-acid betaine metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within methionine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in methionine biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    betaine--homocysteine S-methyltransferase 1
    NP_057877.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016668.3NP_057877.1  betaine--homocysteine S-methyltransferase 1

      See identical proteins and their annotated locations for NP_057877.1

      Status: VALIDATED

      Source sequence(s)
      AI114914, AK077108, BG078929, BY773713, CB948151
      Consensus CDS
      CCDS36748.1
      UniProtKB/Swiss-Prot
      O35490, Q3UEM1, Q3UL72, Q561N0
      Related
      ENSMUSP00000096912.5, ENSMUST00000099309.6
      Conserved Domains (1) summary
      pfam02574
      Location:23314
      S-methyl_trans; Homocysteine S-methyltransferase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      93753399..93774266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)