Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slco1a4 solute carrier organic anion transporter family, member 1a4 [ Mus musculus (house mouse) ]

    Gene ID: 28250, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slco1a4provided by MGI
    Official Full Name
    solute carrier organic anion transporter family, member 1a4provided by MGI
    Primary source
    MGI:MGI:1351896
    See related
    Ensembl:ENSMUSG00000030237
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Oa; Oat; Slc2; Oatp2; Oatp1a4; Slc21a5; AI785519
    Expression
    Biased expression in frontal lobe adult (RPKM 9.8), cortex adult (RPKM 8.3) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slco1a4 in Genome Data Viewer
    Location:
    6; 6 G2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (141751164..141802011, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (141805438..141856284, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (141753961..141804692, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family, member 1b2 Neighboring gene predicted gene 5724 Neighboring gene predicted gene, 30784 Neighboring gene predicted gene, 30843 Neighboring gene solute carrier organic anion transporter family, member 1a1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within anion transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in bile acid and bile salt transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium-independent organic anion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in sodium-independent organic anion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in basal plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier organic anion transporter family member 1A4
    Names
    organic anion transporting polypeptide 2
    sodium-independent organic anion-transporting polypeptide 2
    solute carrier family 21 (organic anion transporter), member 5
    solute carrier family 21 member 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355577.1NP_001342506.1  solute carrier organic anion transporter family member 1A4

      Status: VALIDATED

      Source sequence(s)
      AC156277, AC164572
      Consensus CDS
      CCDS39690.1
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    2. NM_030687.2NP_109612.1  solute carrier organic anion transporter family member 1A4

      See identical proteins and their annotated locations for NP_109612.1

      Status: VALIDATED

      Source sequence(s)
      AC156277, AC164572
      Consensus CDS
      CCDS39690.1
      UniProtKB/Swiss-Prot
      Q9EP96
      Related
      ENSMUSP00000130746.2, ENSMUST00000165990.8
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      141751164..141802011 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036166207.1XP_036022100.1  solute carrier organic anion transporter family member 1A4 isoform X3

      Conserved Domains (1) summary
      TIGR00805
      Location:16411
      oat; sodium-independent organic anion transporter
    2. XM_036166204.1XP_036022097.1  solute carrier organic anion transporter family member 1A4 isoform X1

      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    3. XM_036166203.1XP_036022096.1  solute carrier organic anion transporter family member 1A4 isoform X1

      Related
      ENSMUSP00000032364.8, ENSMUST00000032364.14
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    4. XM_036166206.1XP_036022099.1  solute carrier organic anion transporter family member 1A4 isoform X2

      Conserved Domains (1) summary
      TIGR00805
      Location:5564
      oat; sodium-independent organic anion transporter
    5. XM_011241584.3XP_011239886.1  solute carrier organic anion transporter family member 1A4 isoform X1

      See identical proteins and their annotated locations for XP_011239886.1

      UniProtKB/Swiss-Prot
      Q9EP96
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    6. XM_011241585.3XP_011239887.1  solute carrier organic anion transporter family member 1A4 isoform X1

      See identical proteins and their annotated locations for XP_011239887.1

      UniProtKB/Swiss-Prot
      Q9EP96
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    7. XM_036166205.1XP_036022098.1  solute carrier organic anion transporter family member 1A4 isoform X2

      Conserved Domains (1) summary
      TIGR00805
      Location:5564
      oat; sodium-independent organic anion transporter

    RNA

    1. XR_003956207.2 RNA Sequence

    2. XR_003956206.2 RNA Sequence

    Support Center