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    Slc35g3 solute carrier family 35, member G3 [ Mus musculus (house mouse) ]

    Gene ID: 56293, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Slc35g3provided by MGI
    Official Full Name
    solute carrier family 35, member G3provided by MGI
    Primary source
    MGI:MGI:1927128
    See related
    Ensembl:ENSMUSG00000018776 AllianceGenome:MGI:1927128
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Amac1
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including SLC35G3 (solute carrier family 35 member G3) and SLC35G5 (solute carrier family 35 member G5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 91.9) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    11 B3; 11 42.86 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (69650710..69652670, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (69759884..69761844, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor (ligand) superfamily, member 13, opposite strand Neighboring gene tumor necrosis factor (ligand) superfamily, membrane-bound member 13 Neighboring gene tumor necrosis factor (ligand) superfamily, member 12 Neighboring gene STARR-seq mESC enhancer starr_29859 Neighboring gene STARR-seq mESC enhancer starr_29860 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide A Neighboring gene STARR-positive B cell enhancer ABC_E3966 Neighboring gene STARR-positive B cell enhancer ABC_E1830 Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene STARR-seq mESC enhancer starr_29866 Neighboring gene STARR-seq mESC enhancer starr_29867 Neighboring gene STARR-positive B cell enhancer ABC_E7006 Neighboring gene cholinergic receptor nicotinic beta 1 subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. RT-PCR of fatty acid elongases. Kells AP, et al. Biochem Soc Trans, 1997 Feb. PMID 9056918
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 35 member G3
    Names
    acyl-malonyl condensing enzyme 1
    protein AMAC1
    testicular condensing enzyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019871.2 → NP_063924.2  solute carrier family 35 member G3

      See identical proteins and their annotated locations for NP_063924.2

      Status: VALIDATED

      Source sequence(s)
      AK077181, CF106120
      Consensus CDS
      CCDS24908.1
      UniProtKB/Swiss-Prot
      O35281, Q5F297
      UniProtKB/TrEMBL
      B2RQF0
      Related
      ENSMUSP00000156297.2, ENSMUST00000231829.2
      Conserved Domains (2) summary
      COG0697
      Location:65 → 348
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      cl23754
      Location:61 → 197
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      69650710..69652670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5F297.2 GenPept UniProtKB/Swiss-Prot:Q5F297

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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