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    Tmem230 transmembrane protein 230 [ Mus musculus (house mouse) ]

    Gene ID: 70612, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem230provided by MGI
    Official Full Name
    transmembrane protein 230provided by MGI
    Primary source
    MGI:MGI:1917862
    See related
    Ensembl:ENSMUSG00000027341
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA407821; 5730494N06Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 16.1), ovary adult (RPKM 16.1) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tmem230 in Genome Data Viewer
    Location:
    2; 2 F2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132081412..132089708, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132239492..132249059, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (132065228..132073524, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 (nucleobase transporters), member 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene predicted gene 14051 Neighboring gene predicted gene, 29720 Neighboring gene expressed sequence AV099323 Neighboring gene proliferating cell nuclear antigen

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in synaptic vesicle transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in late endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in recycling endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transmembrane protein 230
    Names
    UPF0414 transmembrane protein C20orf30 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001141971.1NP_001135443.1  transmembrane protein 230

      See identical proteins and their annotated locations for NP_001135443.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1.
      Source sequence(s)
      AK017729, BQ922165, BY278953, BY388388
      Consensus CDS
      CCDS16770.1
      UniProtKB/Swiss-Prot
      Q8CIB6
      Related
      ENSMUSP00000136826.2, ENSMUST00000180286.2
      Conserved Domains (1) summary
      pfam05915
      Location:44118
      DUF872; Eukaryotic protein of unknown function (DUF872)
    2. NM_027478.3NP_081754.2  transmembrane protein 230

      See identical proteins and their annotated locations for NP_081754.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK017729, BQ922165, BY278953, BY388388
      Consensus CDS
      CCDS16770.1
      UniProtKB/Swiss-Prot
      Q8CIB6
      Related
      ENSMUSP00000028816.3, ENSMUST00000028816.9
      Conserved Domains (1) summary
      pfam05915
      Location:44118
      DUF872; Eukaryotic protein of unknown function (DUF872)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      132081412..132089708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500166.5XP_006500229.1  transmembrane protein 230 isoform X1

      See identical proteins and their annotated locations for XP_006500229.1

      UniProtKB/Swiss-Prot
      Q8CIB6
      Related
      ENSMUSP00000105792.2, ENSMUST00000110163.8
      Conserved Domains (1) summary
      pfam05915
      Location:44118
      DUF872; Eukaryotic protein of unknown function (DUF872)
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