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    Rhcg Rhesus blood group-associated C glycoprotein [ Mus musculus (house mouse) ]

    Gene ID: 56315, updated on 21-Apr-2024

    Summary

    Official Symbol
    Rhcgprovided by MGI
    Official Full Name
    Rhesus blood group-associated C glycoproteinprovided by MGI
    Primary source
    MGI:MGI:1888517
    See related
    Ensembl:ENSMUSG00000030549 AllianceGenome:MGI:1888517
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables ammonium transmembrane transporter activity. Involved in ammonium transmembrane transport and regulation of pH. Located in apical plasma membrane. Is expressed in medulla oblongata basal plate ventricular layer; renal calyx; and spinal cord ventricular layer. Orthologous to human RHCG (Rh family C glycoprotein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in genital fat pad adult (RPKM 120.3), kidney adult (RPKM 68.3) and 1 other tissue See more
    Orthologs
    NEW
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    Genomic context

    Location:
    7 D2; 7 45.09 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79243111..79267405, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79593363..79617657, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Mir9-3 host gene Neighboring gene microRNA 9b-3 Neighboring gene microRNA 9-3 Neighboring gene STARR-seq mESC enhancer starr_19284 Neighboring gene predicted gene, 31740 Neighboring gene STARR-positive B cell enhancer ABC_E10444 Neighboring gene cullin 4B pseudogene Neighboring gene STARR-seq mESC enhancer starr_19286 Neighboring gene STARR-positive B cell enhancer ABC_E551 Neighboring gene TOPBP1-interacting checkpoint and replication regulator Neighboring gene kinesin family member 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (3) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ammonium transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ammonium transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ammonium transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ankyrin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables carbon dioxide transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in ammonium homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ammonium transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ammonium transmembrane transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in ammonium transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular monoatomic ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of pH IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in transepithelial ammonium transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in apical plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in basal plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ammonium transporter Rh type C
    Names
    Rh type C glycoprotein
    rh family type C glycoprotein
    rhesus blood group family type C glycoprotein
    rhesus-associated C glycoprotein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019799.3NP_062773.2  ammonium transporter Rh type C

      See identical proteins and their annotated locations for NP_062773.2

      Status: VALIDATED

      Source sequence(s)
      AI648871, AK076757
      Consensus CDS
      CCDS21383.1
      UniProtKB/Swiss-Prot
      Q8BVS0, Q9QXP0
      UniProtKB/TrEMBL
      B2RPX8
      Related
      ENSMUSP00000032766.5, ENSMUST00000032766.5
      Conserved Domains (1) summary
      cl03012
      Location:61436
      Ammonium_transp; Ammonium Transporter Family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      79243111..79267405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011250878.4XP_011249180.1  ammonium transporter Rh type C isoform X1

      UniProtKB/TrEMBL
      B2RPX8
      Conserved Domains (1) summary
      cl03012
      Location:39411
      Ammonium_transp; Ammonium Transporter Family
    2. XM_006541004.1XP_006541067.1  ammonium transporter Rh type C isoform X2

      Conserved Domains (1) summary
      cl03012
      Location:20287
      Ammonium_transp; Ammonium Transporter Family