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    Slc31a2 solute carrier family 31, member 2 [ Mus musculus (house mouse) ]

    Gene ID: 20530, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc31a2provided by MGI
    Official Full Name
    solute carrier family 31, member 2provided by MGI
    Primary source
    MGI:MGI:1333844
    See related
    Ensembl:ENSMUSG00000066152
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ctr; CTR2; AI604396
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 27.9), adrenal adult (RPKM 15.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc31a2 in Genome Data Viewer
    Location:
    4; 4 B3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62198630..62216649)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (62280393..62298412)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (61947479..61959445)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30511 Neighboring gene predicted gene, 23148 Neighboring gene FK506 binding protein 15 Neighboring gene solute carrier family 31, member 1 Neighboring gene cell division cycle 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC117640

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NOT enables copper ion transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in recycling endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    probable low affinity copper uptake protein 2
    Names
    copper transporter 2
    solute carrier family 31 (copper transporters), member 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290518.1NP_001277447.1  probable low affinity copper uptake protein 2 isoform 2

      See identical proteins and their annotated locations for NP_001277447.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 2, which has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AK015878, BC029183, BY482108
      Consensus CDS
      CCDS71401.1
      UniProtKB/Swiss-Prot
      Q9CPU9
      UniProtKB/TrEMBL
      Q9D524
      Related
      ENSMUSP00000103091.2, ENSMUST00000107467.3
      Conserved Domains (1) summary
      pfam04145
      Location:1133
      Ctr; Ctr copper transporter family
    2. NM_025286.3NP_079562.1  probable low affinity copper uptake protein 2 isoform 1

      See identical proteins and their annotated locations for NP_079562.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BB853212, BC029183, BY482108
      Consensus CDS
      CCDS18236.1
      UniProtKB/Swiss-Prot
      Q9CPU9
      UniProtKB/TrEMBL
      Q4KL43
      Related
      ENSMUSP00000081578.3, ENSMUST00000084530.9
      Conserved Domains (1) summary
      pfam04145
      Location:1135
      Ctr; Ctr copper transporter family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      62198630..62216649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006537712.2XP_006537775.1  probable low affinity copper uptake protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006537775.1

      UniProtKB/TrEMBL
      Q9D524
      Related
      ENSMUSP00000103092.2, ENSMUST00000107468.8
      Conserved Domains (1) summary
      pfam04145
      Location:1133
      Ctr; Ctr copper transporter family
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