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    Cd302 CD302 antigen [ Mus musculus (house mouse) ]

    Gene ID: 66205, updated on 3-Aug-2021

    Summary

    Official Symbol
    Cd302provided by MGI
    Official Full Name
    CD302 antigenprovided by MGI
    Primary source
    MGI:MGI:1913455
    See related
    Ensembl:ENSMUSG00000060703
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI159627; 1110055L24Rik
    Expression
    Broad expression in liver adult (RPKM 77.5), liver E18 (RPKM 52.7) and 18 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cd302 in Genome Data Viewer
    Location:
    2; 2 C1.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (60082337..60114828, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (60251993..60284484, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (60090050..60122475, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene bromodomain adjacent to zinc finger domain, 2B Neighboring gene lactate dehydrogenase A, pseudogene Neighboring gene membrane associated ring-CH-type finger 7 Neighboring gene ribosomal protein L10A, pseudogene 4 Neighboring gene lymphocyte antigen 75 Neighboring gene predicted gene 13571 Neighboring gene predicted gene 13580

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within phagocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell cortex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in filopodium ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CD302 antigen
    Names
    C-type lectin domain family 13 member A
    type I transmembrane C-type lectin receptor DCL-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290660.1NP_001277589.1  CD302 antigen isoform a precursor

      See identical proteins and their annotated locations for NP_001277589.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AA222439, AI116405, AK002812
      Consensus CDS
      CCDS71058.1
      UniProtKB/Swiss-Prot
      Q9DCG2
      Related
      ENSMUSP00000074188.5, ENSMUST00000074606.11
      Conserved Domains (1) summary
      smart00034
      Location:22151
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    2. NM_025422.4NP_079698.2  CD302 antigen isoform b precursor

      See identical proteins and their annotated locations for NP_079698.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
      Source sequence(s)
      AA222439, AI116405, AK004267
      Consensus CDS
      CCDS16058.1
      UniProtKB/Swiss-Prot
      Q9DCG2
      Related
      ENSMUSP00000028356.9, ENSMUST00000028356.9
      Conserved Domains (1) summary
      smart00034
      Location:22151
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      60082337..60114828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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