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    A130010J15Rik RIKEN cDNA A130010J15 gene [ Mus musculus (house mouse) ]

    Gene ID: 319266, updated on 5-Mar-2024

    Summary

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    Official Symbol
    A130010J15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A130010J15 geneprovided by MGI
    Primary source
    MGI:MGI:2441776
    See related
    Ensembl:ENSMUSG00000079144 AllianceGenome:MGI:2441776
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in cerebral cortex ventricular layer; cortical plate; lower jaw incisor; submandibular gland primordium; and upper jaw incisor. Orthologous to human C1orf74 (chromosome 1 open reading frame 74). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in bladder adult (RPKM 2.7), testis adult (RPKM 1.9) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See A130010J15Rik in Genome Data Viewer
    Location:
    1 H6; 1 97.62 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (192855777..192860145)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (193173469..193177837)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene UTP25 small subunit processome component Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:194948976-194949260 Neighboring gene STARR-positive B cell enhancer ABC_E3355 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:194995551-194995752 Neighboring gene interferon regulatory factor 6 Neighboring gene STARR-positive B cell enhancer ABC_E7790 Neighboring gene TRAF3 interacting protein 3 Neighboring gene STARR-positive B cell enhancer ABC_E3356 Neighboring gene STARR-positive B cell enhancer ABC_E7791 Neighboring gene STARR-positive B cell enhancer ABC_E9502 Neighboring gene STARR-seq mESC enhancer starr_03470 Neighboring gene STARR-positive B cell enhancer ABC_E8 Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 Neighboring gene STARR-seq mESC enhancer starr_03471 Neighboring gene STARR-positive B cell enhancer mm9_chr1:195090138-195090438 Neighboring gene G0/G1 switch gene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. Sansom SN, et al. PLoS Genet, 2009 Jun. PMID 19521500, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • AL365322.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0739 protein C1orf74 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001160359.1 → NP_001153831.1  UPF0739 protein C1orf74 homolog

      See identical proteins and their annotated locations for NP_001153831.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AL365322, BB858416, BY011244
      Consensus CDS
      CCDS15633.1
      UniProtKB/Swiss-Prot
      Q9DAE8
      Related
      ENSMUSP00000136653.2, ENSMUST00000178744.2
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)

    2. NM_001160360.1 → NP_001153832.1  UPF0739 protein C1orf74 homolog

      See identical proteins and their annotated locations for NP_001153832.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AK077339, AL365322
      Consensus CDS
      CCDS15633.1
      UniProtKB/Swiss-Prot
      Q9DAE8
      Related
      ENSMUSP00000124191.2, ENSMUST00000161235.3
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)

    3. NM_181048.3 → NP_851391.1  UPF0739 protein C1orf74 homolog

      See identical proteins and their annotated locations for NP_851391.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
      Source sequence(s)
      AK037364, AL365322, BY011244
      Consensus CDS
      CCDS15633.1
      UniProtKB/Swiss-Prot
      Q9DAE8
      Related
      ENSMUSP00000106455.3, ENSMUST00000110831.4
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      192855777..192860145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497253.5 → XP_006497316.1  UPF0739 protein C1orf74 homolog isoform X1

      See identical proteins and their annotated locations for XP_006497316.1

      UniProtKB/Swiss-Prot
      Q9DAE8
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAE8.1 GenPept UniProtKB/Swiss-Prot:Q9DAE8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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